Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1568 ATGCAAAAGCAAGAGGAATTGAATGCCGAGTGCAAGGATCACATGCAAATCATCAAGGGCAAGCGCACGAAGCGACAAAGGCTTCCATCTCCACTTAGGTTAACCATGTCAACAACATGTTCCAGTTTAGGAGGAAGAAGCAGCACCGAAAATTCCCTAGGATTTGATCTACCAACAACCTCAAATGAATCAAGGAACGAAGAGGAAGACATGGCAAATTGTTTGATTCTCTTAGCTCAAGGTGATCGCAACAATAGTACCCCAAAACCCTCACACAACAACAAGGGGGGGTTATACCTTTATGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTTCAAGCCCTTGGTGGCCACAGAGCCAGCCACAAGAAATATTATTCCAAGGCAAGTGCAGAAGAAAAGCAAGGAGTTCTTGCAACTTTTGTGAATGAAGTGGATAATAATAATAATCATAATCATGATGATTATTATTGTGACACCACAAGCACCACCCTCACCTTACAATTATCAACGGCTTTGTATAATAATAATAATAGTAGCAGCAACACTAGGATGAGTACTATTAATGCTAAGTGTAAAGTTCATGAGTGTTCCATATGTGGGGCAGAATTTTCATCTGGGCAAGCCTTGGGGGGACACATGAGAAGGCATAGAAATTTTGGGAGTGCACCTACGTGTGGGGCAATTAATGCAAATAGAGAATCCAAGAAACACAACAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCATCACAGAGAATCCAAGTTGTTTCCTTTTCAGGCCAAAGAAAAAGTTATTGTCTTCTCAGCAACTTCTTCTTTGGTGGATTGCCATTACTAA 861 0.4135 MQKQEELNAECKDHMQIIKGKRTKRQRLPSPLRLTMSTTCSSLGGRSSTENSLGFDLPTTSNESRNEEEDMANCLILLAQGDRNNSTPKPSHNNKGGLYLYECKTCNRCFPSFQALGGHRASHKKYYSKASAEEKQGVLATFVNEVDNNNNHNHDDYYCDTTSTTLTLQLSTALYNNNNSSSNTRMSTINAKCKVHECSICGAEFSSGQALGGHMRRHRNFGSAPTCGAINANRESKKHNKDVLNLDLNLPAPEDDHHRESKLFPFQAKEKVIVFSATSSLVDCHY* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1568 286 Pfam C2H2-type zinc finger 195 219 - -
Gso3g1568 286 Pfam C2H2-type zinc finger 101 125 - -
Gso3g1568 286 Gene3D Classic Zinc Finger 99 218 - -
Gso3g1568 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Gso3g1568 286 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 16 285 - -
Gso3g1568 286 MobiDBLite consensus disorder prediction 35 61 - -
Gso3g1568 286 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Gso3g1568 286 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Gso3g1568 286 MobiDBLite consensus disorder prediction 35 67 - -
Gso3g1568 286 SMART c2h2final6 101 123 IPR013087 -
Gso3g1568 286 SMART c2h2final6 196 218 IPR013087 -
Gso3g1568 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 218 IPR013087 -
Gso3g1568 286 SUPERFAMILY beta-beta-alpha zinc fingers 100 218 IPR036236 -
Gso3g1568 286 PANTHER ZINC FINGER PROTEIN ZAT5 16 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1568 Gso-Chr3 41613824 41614942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1568 1 286 C2H2 Transcription Factor Family AT2G28200 40.625 8.45e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1568 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1568 - - gmx:100777739 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1568 3 41613824 41614942 Gso3g1568 3 41613824 41614942 ECH
Gso3g1568 3 41613824 41614942 Gso11g1453 11 16852925 16854306 ECH
Gso19g1545 19 44387077 44388396 Gso3g1568 3 41613824 41614942 GST
Gso3g1568 3 41613824 41614942 Gso10g0513 10 5644504 5645708 PCT
Gso10g0513 10 5644504 5645708 Gso3g1568 3 41613824 41614942 PCT