Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1567 ATGCCGATCAGAAACATCGCCATCGGAAGGCCTGAAGAGGCTACTCACCCCGACACGTTGAAGGCGGGGTTGGCTGAGTTCATCTCCACCTTGATCTTCGTGTTCGCCGGTTCAGGTTCCGGCATCGCCTACAACAAGCTCACCGACAACGGCGCCGCCACTCCTGCCGGCCTCATCTCCGCCTCCATCGCCCATGCTTTCGCCCTCTTCGTCGCCGTCTCCGTCGGCGCCAACATCTCCGGCGGCCACGTCAACCCCGCCGTCACCTTCGGCGCCTTCGTGGGCGGCAACATCACCTTACTCCGCGGCATCGTCTACGTCATCGCCCAGCTCCTCGGCTCCATCGTGGCCTCCCTCCTCCTCGCCTTCGTCACTGCCTCCCCTGTTCCAGCATTCGGGCTTTCCGCTGGAGTTGGAGTTGGCAACGCTTTGGTGTTGGAGATCGTGATGACCTTCGGTTTGGTGTACACAGTCTACGCCACTGCCGTTGACCCCAAGAAGGGCAATTTGGGAATTATTGCTCCCATCGCCATTGGTTTCATTGTTGGCGCTAACATTTTGTTGGGTGGGGCCTTCTCCGGAGCAGCCATGAACCCTGCTGTGACATTTGGGCCTGCTGTCGTGAGCTGGACCTGGACCAACCACTGGATCTACTGGGCCGGGCCTCTCATCGGAGGTGGAATTGCTGGGCTTATCTACGAGGTTGTCTTCATCAGCCACACCCACGAGCAGCTTCCCAGCACTGACTACTAG 753 0.5963 MPIRNIAIGRPEEATHPDTLKAGLAEFISTLIFVFAGSGSGIAYNKLTDNGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYVIAQLLGSIVASLLLAFVTASPVPAFGLSAGVGVGNALVLEIVMTFGLVYTVYATAVDPKKGNLGIIAPIAIGFIVGANILLGGAFSGAAMNPAVTFGPAVVSWTWTNHWIYWAGPLIGGGIAGLIYEVVFISHTHEQLPSTDY* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1567 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1567 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1567 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1567 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1567 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1567 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1567 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Gso3g1567 250 SUPERFAMILY Aquaporin-like 12 245 IPR023271 -
Gso3g1567 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1567 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Gso3g1567 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1567 250 ProSitePatterns MIP family signature. 196 204 IPR022357 -
Gso3g1567 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Gso3g1567 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1567 Gso-Chr3 41594673 41595891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1567 1 250 Major Intrinsic Protein MIP AT2G36830 82.869 3.03e-147 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1567 K09873 - gmx:547967 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1567 3 41594673 41595891 Gso3g1567 3 41594673 41595891 ECH
Gso19g1544 19 44366283 44367429 Gso3g1567 3 41594673 41595891 GST
Gso3g1567 3 41594673 41595891 Gso13g1131 13 25916816 25918833 PCT
Gso13g1131 13 25916816 25918833 Gso3g1567 3 41594673 41595891 PCT