Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1565 ATGGCGTGTCACGGCCTCATAGGAGTGAAACCCCGCGTTGAGATCCCTCCATCCGAAATCGGATGTGGACATTACGGGTGCTCACATTATAAAAGGAGATGTAAGATCATAGCGCCGTGTTGCAATGAAATCTTCGATTGCAGATTTTGCCACAATGAATCTAAGAATTCAATTGAAGTCAAACTTGCTGACTGGCATGATATTTCTCGTCATGATGTGAAGAGGGTCATCTGTTCCTTGTGTGGCACAGAGCAAGATGTTCAACAGATGTGCATTAACTGTGGTGTTTGCATGGGCAGATACTTTTGCTCCAAATGCAAGTTTTTCGATGACGATTTATCAAAGAAACAATTCCATTGTGATGAATGTGGAATCTGCAGAAATGGAGGTGTAGAGAACATGTTCCACTGTAACACATGTGGATTTTGCTATTCATCATACTTGAAGGATAAACACAAATGTATGGAAAAAGCAATGCATACCAATTGCCCAATTTGCTTCGAGTTTCTTTTTGATACAACGAAAGCCATTGCTTTATTGGCATGTGGTCACAACATGCACCTAGGATGCATTAGACAATTGCAACAACGTTTAATGTATGCATGCCCAGTTTGTTCCAAATCATTTTGTGACATGTCAGTTATTTGGGAGAAAGTGGATGAGATTATTGAATCAAGGCCAATGCCTGAAGAATATCAAAATGTAAAGATTTGGATTCTTTGCAACGATTGCGTGGAAACATCTGAAGTAAGTTTTCATACTATGGCGCTCAAGTGCCCTAAATGCAAGTCCTATAATACCAGAAGGACTCAAGCTGCACCAGCTGAACCAGCTGCATCAGCTGAATCAGCTGAATCAGCTGCACCAGCTGAATCAGATGCTTCTTCTAGTTCATCGAGGGTTGAATAG 909 0.4114 MACHGLIGVKPRVEIPPSEIGCGHYGCSHYKRRCKIIAPCCNEIFDCRFCHNESKNSIEVKLADWHDISRHDVKRVICSLCGTEQDVQQMCINCGVCMGRYFCSKCKFFDDDLSKKQFHCDECGICRNGGVENMFHCNTCGFCYSSYLKDKHKCMEKAMHTNCPICFEFLFDTTKAIALLACGHNMHLGCIRQLQQRLMYACPVCSKSFCDMSVIWEKVDEIIESRPMPEEYQNVKIWILCNDCVETSEVSFHTMALKCPKCKSYNTRRTQAAPAEPAASAESAESAAPAESDASSSSSRVE* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1565 302 ProSiteProfiles Zinc finger RING-type profile. 163 206 IPR001841 -
Gso3g1565 302 Pfam Zinc-ribbon 210 268 IPR039512 -
Gso3g1565 302 Pfam zinc-RING finger domain 162 207 IPR001841 -
Gso3g1565 302 ProSiteProfiles Zinc finger CTCHY-type profile. 98 162 IPR017921 -
Gso3g1565 302 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 16 278 - -
Gso3g1565 302 SMART ring_2 163 205 IPR001841 -
Gso3g1565 302 Gene3D - 234 274 - -
Gso3g1565 302 SUPERFAMILY CHY zinc finger-like 23 98 IPR037274 GO:0008270
Gso3g1565 302 ProSiteProfiles Zinc finger CHY-type profile. 20 96 IPR008913 GO:0008270
Gso3g1565 302 SUPERFAMILY Zinc hairpin stack 99 156 IPR037275 -
Gso3g1565 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 208 IPR013083 -
Gso3g1565 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 16 278 - -
Gso3g1565 302 Pfam CHY zinc finger 27 108 IPR008913 GO:0008270
Gso3g1565 302 SUPERFAMILY RING/U-box 162 214 - -
Gso3g1565 302 MobiDBLite consensus disorder prediction 273 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1565 Gso-Chr3 41577657 41580963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1565 7 283 C2H2 Transcription Factor Family AT3G18290 39.929 7.97e-55 189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1565 3 41577657 41580963 Gso3g1565 3 41577657 41580963 ECH