Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1562 ATGCTCCTCCAAACAACCTGCATTTTTCTACTCTCAGTTCTTCTGAGCTCGTTTTCACCACTTGGAACCGCAATGCTCAACCTCACTCTTCCCGGAGCTCATCCTGACCCCGAAGCCGTTGCCCACGAAGTTCATAGGAAGGTTAATGCTTCAATCGCAAGAAGGGAAATGCTATCAGTGTCTGAAAAAGACGGGTCTTCGTGCCTAACGGGAAATCCCATCGATGATTGTTGGAAATGTGACCCAGATTGGCCAAATAACCGGCAGAGGCTAGCTGACTGCGTCATTGGGTTCGGTCAGTACGCAAAGGGAGGAAAAGGTGGTGAATTTTACGTTGTTACTGATTCCTCTGATGATGACCCTGTGAACCCAAAACCTGGCACGCTTAGATACGCAGTGATACAGAACGAGCCACTGTGGATCGTGTTCCCTAGTAACATGATGATTAAGCTGTCTCAGGAACTGATTTTTAACAGCTACAAGACCATTGATGGGCGTGGAGCTGATGTGCACATTGTGGGAGGAGGGTGCATTACTTTGCAGTTTATAAGCAATGTCATCATTCACAACATTCACATCCATCATTGTCATCCCTCAGGGAACACAAACGTTCGGTCAAGCCCGGAGCACTACGGATTCCGGACAGAATCAGACGGAGACGGCATCTCCATCTTCGGGTCGAAGGACATATGGATCGACCACTGCACCCTTTCACGGTGCAAGGACGGTCTGATCGACGCGGTGATGGGGTCCACAGGGATAACCATCTCCAACAACATGCTATCCCACCACAACGAGGTCATGCTACTCGGCCACAGCGACGACTACCTCCCTGACTCCGGAATGCAGGTCACCATCGCCTTCAACCACTTCGGGGAGAAGCTCGTCCAGCGCATGCCCCGCTGCCGGAGGGGATACATCCACGTCGTCAACAACGACTTCACCGAGTGGGAGATGTACGCCATTGGTGGCAGCGGCGAGCCCACCATAAACAGCCAGGGTAACCGTTACATGGCACCGGAAAACCCCTTCGCTAAGGAAGTTACTAAGAGAGTCGACACGCAACAGTCCAAGTGGAAGGGATGGAACTGGCGCTCCGAGGGTGACATTCTCCTGAACGGGGCCTTTTTTGTTGCGTCTGGTGAAGAACTTGAAGTCAAGTATGAGAAGGCATACAGCGTCCAACCCAAATCCGCTGATCGCATCTCTTTTCTCACCATGTCCGCAGGTGTTCTCGGTAATGCCAGGGACAACAACCTTGGCATGTGGAGCAGAGGACCTTCCGATGACACCACGGAGTCCGGAATGGAATACACGGATGACATGTCCACCACTGCAACAATGCTTCTGTCTTCTTTTTTGCTTCTCTTCTTCTTGTCTTACACGATATTACGCTTGACGGTTATTCTTTAA 1413 0.5103 MLLQTTCIFLLSVLLSSFSPLGTAMLNLTLPGAHPDPEAVAHEVHRKVNASIARREMLSVSEKDGSSCLTGNPIDDCWKCDPDWPNNRQRLADCVIGFGQYAKGGKGGEFYVVTDSSDDDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNMLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYMAPENPFAKEVTKRVDTQQSKWKGWNWRSEGDILLNGAFFVASGEELEVKYEKAYSVQPKSADRISFLTMSAGVLGNARDNNLGMWSRGPSDDTTESGMEYTDDMSTTATMLLSSFLLLFFLSYTILRLTVIL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1562 470 SMART amb_all 146 343 IPR002022 -
Gso3g1562 470 Gene3D - 71 413 IPR012334 -
Gso3g1562 470 Pfam Pectate lyase 155 331 IPR002022 -
Gso3g1562 470 SUPERFAMILY Pectin lyase-like 67 399 IPR011050 -
Gso3g1562 470 PANTHER PECTATE LYASE 12-RELATED 6 428 - -
Gso3g1562 470 PANTHER PECTATE LYASE 18-RELATED 6 428 IPR045032 GO:0030570
Gso3g1562 470 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Gso3g1562 470 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Gso3g1562 470 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Gso3g1562 470 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Gso3g1562 470 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Gso3g1562 470 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Gso3g1562 470 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Gso3g1562 470 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1562 Gso-Chr3 41549755 41553379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1562 1 469 Polysaccharide Lyase AT3G53190 73.950 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1562 K01728 - gmx:100775595 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1562 3 41549755 41553379 Gso3g1562 3 41549755 41553379 ECH
Gso3g1562 3 41549755 41553379 Gso13g1128 13 25885185 25890682 PCT
Gso13g1128 13 25885185 25890682 Gso3g1562 3 41549755 41553379 PCT