Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1555 ATGGATTCAACACTATTTCTAAACCCCGCAGACTTTGAATTACCCCACGACTACGACGAAAACGCAGAAGCAAATCTCATTGAAATTCCCGCAGACTTTGGATTATCCCACGACGACGACGACGAAACCGACGATGAAGAAGAAGACGACGACGACGACGAAGACGAAGAGTATGTTCCCGCCGGGGCGCCTCCTAGGGTTTCGCACGACGCTCCCCGTGTCAGTACATCCAACAGCGAAGTCGTTACCCTCATCGAATCGCAGAACAAGCGCCGTAGAACCGAAGGAGGCGAGGCTTCTTGTTCCTTCGCGAATGGGAGCCTGAGCCAAGAGAACGAGTGGGCCAGCCCTGACGTTGACGGTCTCCTTTGCCCTATTTGTATGGACGCTTGGACCAATAACGGCGAGCATCACATCTGCTGTCTCCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAAATGGCTTCAACACCGCAGAAATTCCAATAAGTGTCCTCAATGTAAAGTGAAATGCTCGTTGAAGGATGTGAGGAAACTCTATGCCTCTCAAGTAGTGGCCGTCGAGGAAGAAAATCAGAAGAGAATTCGGTCACTTGAGGCCAAATGTGCTGCCCTTGAAAGCAAGGTAAGTAATTGGCACAAGAAGGAAACTGGATGGCAGAAAAGGGAAGCTGCATTGAGTTTTCAAGTTCAGAAGCTTACAGAGGGAAGTGATTGCCACAAGAAAGAAGCCGGATGGCAGAAGAAGGAAGCTGCATTGAATCTTCAAGTTCAGAAGCTTACTGAGAGAAACACTTATTTGGAGATGCTACTAGATATGCAGAACAGGCAATTGATGTTCAATTTTGAATTGCAGATGAGCTTGATGTCTCCATTTGAGATGCAAGACATCTTACTGCCTTCTGGCACAAATGGTGTTAAAGACCTACACATTTCTGCTTCTCATAGTAGTAGTAGCCTGGCCCTCTTTGCTTCTCTAGGAAAGAAATTATCAGTGCTCAGCTTGGACAGCGGCAACCTTGTTGTCAATTATGACCTACAGGTTCCTGCATGGTCTTGTTCATGGGATCTCAACAATTCACATTACATATATGCTGGACTACAGAATGGTTCTGTCTTGGTGTTTGATATGCGCCAAACTGCAGGACCCATGAAATCCCTTGTTGGTTTGACTAGCAACCCTGTGCATACTGTACATGCTCTTGCACAAACTTCAAGTTTGTCTTCTGGTGTTAAAACCATCCTATCTGCATCTGCTGTTGGCCTTTGTCAGTGGAACCTTGATTCTGAAGAGCGGCCGCTTATGGTTCCTGAAACTGATAATCAAGGAGTTTGCATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGCTTCATACCGACCGAAATATGACATGTCCATGGATCTGCGTCACTCTCAACCATCGCCAACTCCTCCTAGGACGCAACACGGAGTACAGGGCACTCATGTCTTGTTCAATAGAATGGGCAGTCATCATTTCCAAAAGGTGGGTTCCTCGTATGCCAGCGTAAGTAAATTTCTACTACCAAAATGTGTAATTATGGACATAGAGGATCAGAGCAGATTGTTTGCGTCTTTGAATGAAGATACACGTGATTTGGTCTTGCATGCGTTGCCATCTTTTAGTGTTCTTCAGCAATTGAAAATGCAAGCTCAGGGTCGTGATCTTAGGTACTCACCTAGCCATGGAATTCTTGGTTGTTTAAGTGAGAACACATTGCAGCTTTTTTCCAAACGCTCGTGGTAA 1779 0.4587 MDSTLFLNPADFELPHDYDENAEANLIEIPADFGLSHDDDDETDDEEEDDDDDEDEEYVPAGAPPRVSHDAPRVSTSNSEVVTLIESQNKRRRTEGGEASCSFANGSLSQENEWASPDVDGLLCPICMDAWTNNGEHHICCLPCGHIYGMSCIKKWLQHRRNSNKCPQCKVKCSLKDVRKLYASQVVAVEEENQKRIRSLEAKCAALESKVSNWHKKETGWQKREAALSFQVQKLTEGSDCHKKEAGWQKKEAALNLQVQKLTERNTYLEMLLDMQNRQLMFNFELQMSLMSPFEMQDILLPSGTNGVKDLHISASHSSSSLALFASLGKKLSVLSLDSGNLVVNYDLQVPAWSCSWDLNNSHYIYAGLQNGSVLVFDMRQTAGPMKSLVGLTSNPVHTVHALAQTSSLSSGVKTILSASAVGLCQWNLDSEERPLMVPETDNQGVCISLAYCPSSDDIVASYRPKYDMSMDLRHSQPSPTPPRTQHGVQGTHVLFNRMGSHHFQKVGSSYASVSKFLLPKCVIMDIEDQSRLFASLNEDTRDLVLHALPSFSVLQQLKMQAQGRDLRYSPSHGILGCLSENTLQLFSKRSW* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1555 592 MobiDBLite consensus disorder prediction 35 58 - -
Gso3g1555 592 MobiDBLite consensus disorder prediction 1 79 - -
Gso3g1555 592 ProSiteProfiles Zinc finger RING-type profile. 124 170 IPR001841 -
Gso3g1555 592 SUPERFAMILY RING/U-box 112 176 - -
Gso3g1555 592 SMART ring_2 124 169 IPR001841 -
Gso3g1555 592 CDD mRING-C3HGC3_RFWD3 120 170 - -
Gso3g1555 592 PANTHER RFWD3 PROTEIN 37 588 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Gso3g1555 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 213 IPR013083 -
Gso3g1555 592 SUPERFAMILY WD40 repeat-like 303 588 IPR036322 GO:0005515
Gso3g1555 592 Coils Coil 190 217 - -
Gso3g1555 592 Pfam Ring finger domain 124 170 IPR001841 -
Gso3g1555 592 Gene3D - 294 473 IPR015943 GO:0005515
Gso3g1555 592 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 37 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1555 Gso-Chr3 41473280 41479993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1555 123 210 C3H Transcription Factor Family AT4G01270 31.193 8.67e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1555 3 41473280 41479993 Gso3g1555 3 41473280 41479993 ECH