Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1549 ATGGGTAGAGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGACCATGGTCACCAGAAGAAGATGAAACGCTAAAGGATTACATAGAGCAACATGGCACTGGAGGGAATTGGATTGCGCTTCCTCAAAAAGTTGGTTTAAAAAGATGTGGTAAGAGCTGTAGACTAAGGTGGCTTAATTATCTTAGACCCAACATCAAGCATGGTCAATTCTCTGATGCAGAAGATAAAATAATCTGCAGCCTCTTCGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGGAGGACTGACAATGATATAAAAAACTACTGGAACACCAAGCTCAAGAAGAAAATGATGGCCATGAATCCTTCAGTACTCCAAAGGAAGCCTCAACAAATTACCCTTTTATCCATCCTTCAAAGTTCAGCATCATCATTCAGAGACAGCAACAACATCTCATACTACCACCCTCACGGTTCCTTTTCCTACTCATCATCAAGTCTTGTGAGTGGTAACAACTCTTCTGCTAATGCTGATTCCTTGTTTCAAGCACAAGAGAGTTTCATGGACCCCAAGTGCCAATTCAAAGATAGCAGCATCTTTGTGTCTGGAGGTGAAGCCACAGCCACGGCCACGGCCACTAGTTGCAGCTCTTCTGATGGGAGCTGCAACAACCAGATAAGCCATGTCATGGAGCCTGCTGAGTTTGGTGATGCAAGTTTTGTTGGTGGGGCCAATAATCACATCTACAGTGGGGAGGAAGATGATAATAATACTCAGAAGTTGATGATGTTCTCCAATGCTGGTGGTAGTGTTAGTGGGTGGACAGGCAAACAAAATGGATTATTGTGGGAACAAAATCCATTGGATTATGGTCTTGAGGAAATTAAACAGCTCATTAGCACTAATAACAGTTGCAACAACTTTTTGTTTGATGACAAGAAGACACAAGAAAGAGTCACGTACTACTGA 969 0.4283 MGRAPCCDKANVKKGPWSPEEDETLKDYIEQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNPSVLQRKPQQITLLSILQSSASSFRDSNNISYYHPHGSFSYSSSSLVSGNNSSANADSLFQAQESFMDPKCQFKDSSIFVSGGEATATATATSCSSSDGSCNNQISHVMEPAEFGDASFVGGANNHIYSGEEDDNNTQKLMMFSNAGGSVSGWTGKQNGLLWEQNPLDYGLEEIKQLISTNNSCNNFLFDDKKTQERVTYY* 323
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1549 322 PANTHER OS09G0431300 PROTEIN 1 306 - -
Gso3g1549 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Gso3g1549 322 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso3g1549 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Gso3g1549 322 SMART sant 67 115 IPR001005 -
Gso3g1549 322 SMART sant 13 64 IPR001005 -
Gso3g1549 322 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso3g1549 322 PANTHER TRANSCRIPTION FACTOR RAX3 1 306 - -
Gso3g1549 322 CDD SANT 16 62 IPR001005 -
Gso3g1549 322 Gene3D - 69 133 - -
Gso3g1549 322 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso3g1549 322 Gene3D - 7 68 - -
Gso3g1549 322 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso3g1549 322 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso3g1549 Gso-Chr3 41416811 41418920 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1549 1 119 MYB Transcription Factor Family AT5G57620 85.714 8.84e-76 234
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso3g1549 Myb_DNA-binding 3e-15 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1549 K09422 - gmx:100301876 618.231
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1549 3 41416811 41418920 Gso3g1549 3 41416811 41418920 ECH
Gso19g1530 19 44224527 44226622 Gso3g1549 3 41416811 41418920 GST
Gso3g1549 3 41416811 41418920 Gso10g0468 10 5086016 5088382 PCT
Gso10g0468 10 5086016 5088382 Gso3g1549 3 41416811 41418920 PCT