Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1536 ATGAAGTGTTTTCCATTCTCGTATGGAGAGAAAAAAGATGAACCGAAAGGCTTGCAGTTGCAGTCAACATCGGGTCGATCTGACAATTCCATGTGTGTTGAGGCTGAGGTTAGAAGATCCGGTTCTGAGTTAAATTCTCAGGATGTTTCAGACAATGGCAGCTCAGAATCCCAGAGGAGGAATGCAATTCCCAGTTTGTCCCAGAGACCCAGCAACCTCAGAGTGTTTACTGTATCTGAACTGAAATCAGCCACGAAGAATTTCAGTCGCTCTGTTATGATCGGAGAGGGTGGGTTTGGGTGTGTCTACCTGGGATTGATAAGAAGCGCAGAGGACTCCTCCAGAAGAATTGAAGTTGCAGTTAAACAACTTAGTAAAAGAGGAATGCAGGGCCATAGGGAATGGGTGACAGAAGTGAATGTTCTGGGCATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGTTACTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTAATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATTTATCTCACCGATCAGAGACTCCTCTCCCATGGACTAGGAGATTAAAAATAGCTCGAGATGCAGCTCGTGGGTTAACATACCTGCATGAGGAAATGGATTTCCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTATTGGATGAACAGTGGAATGCAAAGCTATCAGACTTTGGGTTAGCAAGGTTGGGACCATCAGATGGACTGACTCATGTCTCAACGGCGGTTGTAGGAACAATGGGATATGCCGCTCCTGAATATGTTCAAACCGGACGTCTAACTTCAAAGAATGATGTGTGGAGCTACGGTGTCTTCCTTTATGAACTCATCACTGGTAGGCGCCCTTTAGATCGAAATCGCCCCAGGCGTGAGCAGAAGTTGTTGGAATGGATAAGGCCATACCTATCAGATGGGAAGAAATTTCAACTAATATTAGATCCAAGACTTGATAAGAAACAAGTCTTCAAGTCAGCCCAGAGACTCGCTATGATTGCTAACCAATGCTTGGCAAAAAATCCAAAGAATCGCCCAAAGATGAGTGAGGTATTGGAAATGGTAAATGGAATGGTAGAATCATCATCCAGTTCTAGTCCACAGTTGCCCCTGAGGAGTGTGGTGACATTGGAAGCTTCCCAGGATACTGAAACAAATAACAAGAAACGAACCATGGATCAGAAGCTCGGAGAAAGTAATTGGTTTGTTAGGATGTGGAGACCAAAGCTTGTAAGAACATGCTGA 1287 0.439 MKCFPFSYGEKKDEPKGLQLQSTSGRSDNSMCVEAEVRRSGSELNSQDVSDNGSSESQRRNAIPSLSQRPSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYLGLIRSAEDSSRRIEVAVKQLSKRGMQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRSETPLPWTRRLKIARDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPRREQKLLEWIRPYLSDGKKFQLILDPRLDKKQVFKSAQRLAMIANQCLAKNPKNRPKMSEVLEMVNGMVESSSSSSPQLPLRSVVTLEASQDTETNNKKRTMDQKLGESNWFVRMWRPKLVRTC* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1536 428 Gene3D Phosphorylase Kinase; domain 1 68 173 - -
Gso3g1536 428 Gene3D Transferase(Phosphotransferase) domain 1 174 389 - -
Gso3g1536 428 PANTHER KINASE 1B 7 423 - -
Gso3g1536 428 Pfam Protein tyrosine and serine/threonine kinase 93 367 IPR001245 GO:0004672|GO:0006468
Gso3g1536 428 MobiDBLite consensus disorder prediction 1 17 - -
Gso3g1536 428 SUPERFAMILY Protein kinase-like (PK-like) 63 369 IPR011009 -
Gso3g1536 428 MobiDBLite consensus disorder prediction 40 66 - -
Gso3g1536 428 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1536 428 CDD STKc_IRAK 94 372 - -
Gso3g1536 428 PANTHER OS01G0588500 PROTEIN-RELATED 7 423 - -
Gso3g1536 428 ProSitePatterns Protein kinases ATP-binding region signature. 94 122 IPR017441 GO:0005524
Gso3g1536 428 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1536 Gso-Chr3 41269621 41274381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1536 1 384 Glycoside Hydrolase AT3G07070 41.388 1.62e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso3g1536 PK_Tyr_Ser-Thr 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1536 - - gmx:100790026 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1536 3 41269621 41274381 Gso3g1536 3 41269621 41274381 ECH
Gso19g1520 19 44076244 44080470 Gso3g1536 3 41269621 41274381 GST
Gso3g1536 3 41269621 41274381 Gso10g0495 10 5384026 5388421 PCT