Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1531 ATGAATGCCGAGACTCTTGCTAGGTATGCCCATTCTCGGTGCATTGAGGGATTGACTAAAGAATGTAAAGACAACGCACAAGAAAATTCTCATTCTCATGTGAAAGATAAAAAAGGTGGAGAGGAAGTTGTGTGTTCCAATTGCGTGCGAGGTGGAGTACTTTTATCTTGCTCTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTGTGGATCCTCCTCTCAATTACATTCCTTTGGGGTTTTGGCATTGTATCTGGTGCACTAAGAAAAAGATGGAGCTTGGTGTGCATTCCGTTTCTAAAGGAGTGAAATCCATTTTGGATTCTAGAGAAGTGGTTTCAAAAAATAAAGTGATGCAAAGGGAGTACTTTGTCACGTATCATGGTCTTGCTCATGCTCACAACCGCTGGATTCCAGAATCAAAATTGCTTCTCGAGGCTCCTAAGCTCTTGGCCAAGTTTAAGAGGAAACTGCAGGTTACCACCAGGTGGAAAAGAGATTGGAGTATACCCCACCGTTTGCTGCTAAAAAGGGAAATTGTATTTTCAAAACAAAATGATCAACATTTTGATGGGCATGGTGACAATGGTTCAAATTGCCGTTATGAGTGGCTTGTCAAATGGAGGGGTCTTGGTTATGATAATGCTACTTGGGAGTTAGATGATGCTTCATTTTTGACGTCACCTGAAGGCAGGAAAGTCATAGATGATTACGAAAGTCGTCGCAAGAGAGCAGAGAGACTGTCAAAAAATCATTTTGAAGCTAATGAGGAGAGAAAAGCTTCCTTTTCTGAATTATCAGTGTTGCCAACTGGAGATTCGCCAGGATTTTATAACCAGCATTTGACTTATGTGAACAAGCTTCGCATGTGTTGGCACAAAGGTCAGAGTGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGGGTTATGAAGGTGATTTTGTTTATATTATCTTTGAATTGTAATGTGAGGAGGCCTTTTCTCATCATCTCAACTTCTGCTGCCCTCTCTGTATGGGAAACAGAGTTCTTACGTTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAGACAGAGATGCACGGAGTAGCATCAGGGCATTAGAGTTTTTTAATGAACATGGTGGAATATTATTTCAAATACTGTTATCATCTTCTCATATTATTGTTAAGGACTTGCATGAACTAAGATGCATTACATGGGAAGCAATAATAATTGATGAATGCCAGCAATCCAGACTTTCAGGACACTTGGACGATATCAAGATTCTAAAAGCTGAAATGAGACTCCTTCTTGTTAGTGGACAAATCAAGGAAGATCAAGCTGATTATATCAAACTGCTTTCATTACTCAAGTCCGGACAGCATGGATCAAGTATTGCTCAAGTGGAAACTTATTTCTCTGCTTCTTCTACCATTTCCAATTTGAAGAGTCAATTGGAAAAATATGTTGTATTCAAATGCAAATCTGGCTCCACTAGGTTTGTAGAGTATTGGGTTCCAGCCTGCCTTTCCCATTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTTAATGTTGTTATGCTCAGGCCAAAAGTCCGACTCAGTTGATGCCCTCCATGACCTTATTATCTCAATAAGGAAGTGCTGTGACCACCCTTATCTCCTGAACCCGGAACTGCAAAGTTTTGTTACTAAAGGTCTACCTGATGAAGAGCGTTTAAATATTGGTATACAAGCAAGTGGAAAACTGCAACTCCTTGAAAAAATCCTTTTGGAAGCAAGAAGTCGTGGGTTAAGGGTGTTAATATTATTTCAGTCAACTTGTGGCTCTGGATCAATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAGGATTGCTATGTACGATATGATAGAGGTTATACCCCAAAATCAAAGCAAGCTGCTTTAGACACATTTAATGATGGAGAAAGTGGAAAATTTGTCTTCTTGATGGAAAACCGTGCCTGTCTCTCTAGTGTTAAGCTTTCTTCAGTGGACACTGTTATATTGTTTGACAGTGATTTGGAACCACAAAATGACCTAAGAGGCTTACAAAGGATGTCTATCAGCTCACAGTTTAAACAGATTACTGTTTTCAGATTGTACTCATTTTTCACTGTTGAAGAAAAAATTTTAATGCTTGCAAAAGAGGGTATAGCTCTTGACAGCAATGTGCGATTGCTTAGCCAGAGTATTTGTCCCACCCTGCTAAAATGGGGGGCCTCCTATTTGTTCAATAAGCTTGATGATTTGCATGCCAGTGTTGTTTCTACTCCAGACACTGTAGATATGTCACTTCTATGTGATACAACCTCTGAATTATCATCCCAATTGGTTTGTGGTGCTGATGATACTGATTGTCATGGATGGTCATTCATATCAAGAATACAGCAGAATGGAGGGGAATATGCGAGGGATGTTTTATTGCCAGGAGAAAGAATAATGAAATCTGGCGGTGAGCCATGTGGTTTTTCCTGGAGTGATCTTGAAGGAAGGCATCCTAAATGGAAATTTTTGCCTGTTTCATCTCAGAGGATCAGGAACACAGTCAAACATTTTGATTACGGACTAAGAGAATCTGAATGTGAAAAATACACCTTTATAGAAAAGAGGACAGCGTCGAAGGATAATGTTGATCCCAAGAGGAGAAAAGTGTCCAAGGATAATGCTGATCCTGAGTGGAGCAAATGGACCATGAATAAAGTTGATCCCAAGAGGAGAAAGGTGTCCAATGATGTTGTTGATTCTAAAGGAAGGGAAGTGTCCAGGAATATTGTTGATTCCAAATATTGGAAAACAAGGTTGAAGAGCAAGAAGAATACAAGTGTTGTCAATAGAGCAAATAAATCAAATGGGCATCCCTTGACCAATGAAACTACGGGAAAAATTGCAACGAACATGCAATTTTCAGAGAAAAAGAACCCGCCTGACATACGAAATTTGCCAAAGCCAGATATATCAGGTCTTTGCGACATTCTACGTTTTTCGAAAAAAGTCAAGGCTGTCGCCATGAGGATTCTTGAGCACATATTCAAACATTACAATGTTAATTGCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTAGCAGCTTGTTTGTTGGAACATGAGATTGATATGAAAGATTCACTTGCTCTAGCAAAACTGTACTTGAACTTCGATTGCAAGGAAGAGGAAGCCACCGATGTTTACTCAGAACTGTGGAAGCATGTGAAGGATTTTTCTAATTGTGTACAAAATGGACTTTGCGTCGAGAAATGCAATAGAAGTGGTGCTTCAGACTCCAACATGCCTGAGCTGAATGATTTGGCAGAGGAGGAGAAGCAGAAGGATTTTCTGGGTACTTGTGTTTCAAAACTTGTGAAATCTGTCACAAATGAACTCAATCTTCAAATGAAATCTCCCACAACAGTGGTTTCACAAGACCTGAGTTGTACTCATGAAATTTGTTTATCTCCAAATACACCTGGTAGTTTTCCTGTGGAAGGAGATGCTATCTCCATGGAATCTGGCTCAGAAGATGACAGAGTGAACGCTATAACATTAATAACTGCAGAAGATTCATCCGTTGATCACGGGAGTAATGATGTCAACCCTGTTACTGGTTCTTTGGAAAGACAGAGCCCTATTAGAAGTACAGATATTACACAATCTGATGGCAATGTTTTTGAAGATCCTCAAATTTTAGTGAATAAAGTGGTTGCTATTGACAATGGTATGAATATGTCTACTCATTCTGCGCAGCTTGACAGTGTTGAGGCAGATGCTGGAACTTCTGCTAGTACTGCTGTTCCTGAGGTCAGACGGTGGTACAGTGTAATGAGTCCTGTATGTGATGAGTCAACTGCTCTGAAGTTTCCTGAGACTACCTTACCATATATGCAACCATCGGATTCAAATTTGTGGCCATTGCCTCAGATGGCAATGTCTGCTATTCCATCTTTTCCGGAGAACAATGCGGCTAGTACAGTCATGCCTCTAGATGATATTTTTCGTCATAGTGGTGAGGATCATCGCTATATTCATGAGGCTGAAGTAATATTGGAAGCACCAAAGGACCTTAACTCTTCCTTTGTTTCACCTGTGATACCGCAACCCTTCACTAGTGTGCCCATGAATGAAAATGCGACAAATTCACCTCACGGCATTACTATTCCTGGATTTATGAACAGTGATTACTCTGAAGCTCACTCTGTGACATCTGAAGTGTCCCACCTTGCCTACACAGACCCACTACTGGGTGAAATGTCGATAATAGAAAACATGAATGAAGAAGCTTTCATAGATCTACTACCAATAGAAATGGAGAGAATTGAAAAGGAGAAAGAAGAAGCCTTCAAGATACATGAGCAAAAGATATTGCAGCTCCAATCTGACTATGAAAAGGAGGTTGAAAAGTTAAGTGTAAAGTACAAGATGTTGCTTCAGAATGTTAATACTGAAGTAGCTCTAAAAAGAACGGAACTTGAGACACAATGTGAATTAGTGTTAAGGAACAAGGTATTAGCTCAAGTTTGGACCCATAATCTTGATAGTTGTGAAGGAGATGTTGTACAGTGCACAGAACAAGAGGCAATGCCTAGTTCTCATAAGACTGCTCAAGACTAA 4650 0.4004 MNAETLARYAHSRCIEGLTKECKDNAQENSHSHVKDKKGGEEVVCSNCVRGGVLLSCSGKGCQRRYHPSCVDPPLNYIPLGFWHCIWCTKKKMELGVHSVSKGVKSILDSREVVSKNKVMQREYFVTYHGLAHAHNRWIPESKLLLEAPKLLAKFKRKLQVTTRWKRDWSIPHRLLLKREIVFSKQNDQHFDGHGDNGSNCRYEWLVKWRGLGYDNATWELDDASFLTSPEGRKVIDDYESRRKRAERLSKNHFEANEERKASFSELSVLPTGDSPGFYNQHLTYVNKLRMCWHKGQSALIVDDQIDQERVMKVILFILSLNCNVRRPFLIISTSAALSVWETEFLRLAPSANLVVYKGDRDARSSIRALEFFNEHGGILFQILLSSSHIIVKDLHELRCITWEAIIIDECQQSRLSGHLDDIKILKAEMRLLLVSGQIKEDQADYIKLLSLLKSGQHGSSIAQVETYFSASSTISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQYCSMLLSNLMLLCSGQKSDSVDALHDLIISIRKCCDHPYLLNPELQSFVTKGLPDEERLNIGIQASGKLQLLEKILLEARSRGLRVLILFQSTCGSGSIGDILDDVLCQRFGKDCYVRYDRGYTPKSKQAALDTFNDGESGKFVFLMENRACLSSVKLSSVDTVILFDSDLEPQNDLRGLQRMSISSQFKQITVFRLYSFFTVEEKILMLAKEGIALDSNVRLLSQSICPTLLKWGASYLFNKLDDLHASVVSTPDTVDMSLLCDTTSELSSQLVCGADDTDCHGWSFISRIQQNGGEYARDVLLPGERIMKSGGEPCGFSWSDLEGRHPKWKFLPVSSQRIRNTVKHFDYGLRESECEKYTFIEKRTASKDNVDPKRRKVSKDNADPEWSKWTMNKVDPKRRKVSNDVVDSKGREVSRNIVDSKYWKTRLKSKKNTSVVNRANKSNGHPLTNETTGKIATNMQFSEKKNPPDIRNLPKPDISGLCDILRFSKKVKAVAMRILEHIFKHYNVNCQEVSTVQAFEISVCWLAACLLEHEIDMKDSLALAKLYLNFDCKEEEATDVYSELWKHVKDFSNCVQNGLCVEKCNRSGASDSNMPELNDLAEEEKQKDFLGTCVSKLVKSVTNELNLQMKSPTTVVSQDLSCTHEICLSPNTPGSFPVEGDAISMESGSEDDRVNAITLITAEDSSVDHGSNDVNPVTGSLERQSPIRSTDITQSDGNVFEDPQILVNKVVAIDNGMNMSTHSAQLDSVEADAGTSASTAVPEVRRWYSVMSPVCDESTALKFPETTLPYMQPSDSNLWPLPQMAMSAIPSFPENNAASTVMPLDDIFRHSGEDHRYIHEAEVILEAPKDLNSSFVSPVIPQPFTSVPMNENATNSPHGITIPGFMNSDYSEAHSVTSEVSHLAYTDPLLGEMSIIENMNEEAFIDLLPIEMERIEKEKEEAFKIHEQKILQLQSDYEKEVEKLSVKYKMLLQNVNTEVALKRTELETQCELVLRNKVLAQVWTHNLDSCEGDVVQCTEQEAMPSSHKTAQD* 1550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1531 1549 MobiDBLite consensus disorder prediction 883 908 - -
Gso3g1531 1549 Gene3D - 1441 1522 - -
Gso3g1531 1549 Gene3D - 103 159 - -
Gso3g1531 1549 Gene3D - 497 731 IPR027417 -
Gso3g1531 1549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 100 IPR013083 -
Gso3g1531 1549 Pfam Chromo (CHRromatin Organisation MOdifier) domain 104 158 IPR023780 -
Gso3g1531 1549 MobiDBLite consensus disorder prediction 1203 1233 - -
Gso3g1531 1549 SMART PHD_3 44 89 IPR001965 -
Gso3g1531 1549 Gene3D - 160 242 - -
Gso3g1531 1549 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 584 749 IPR001650 -
Gso3g1531 1549 ProSiteProfiles Chromo and chromo shadow domain profile. 102 167 IPR000953 -
Gso3g1531 1549 ProSiteProfiles Chromo and chromo shadow domain profile. 177 251 IPR000953 -
Gso3g1531 1549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 734 IPR027417 -
Gso3g1531 1549 ProSiteProfiles Zinc finger PHD-type profile. 42 91 IPR019787 -
Gso3g1531 1549 ProSitePatterns Zinc finger PHD-type signature. 45 88 IPR019786 -
Gso3g1531 1549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 459 IPR027417 -
Gso3g1531 1549 Pfam SNF2-related domain 311 553 IPR000330 GO:0005524|GO:0140658
Gso3g1531 1549 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 19 1104 - -
Gso3g1531 1549 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1189 1536 - -
Gso3g1531 1549 SUPERFAMILY Chromo domain-like 61 166 IPR016197 -
Gso3g1531 1549 SUPERFAMILY Chromo domain-like 170 242 IPR016197 -
Gso3g1531 1549 Coils Coil 1471 1491 - -
Gso3g1531 1549 SUPERFAMILY FYVE/PHD zinc finger 40 93 IPR011011 -
Gso3g1531 1549 SMART chromo_7 168 244 IPR000953 -
Gso3g1531 1549 SMART chromo_7 101 160 IPR000953 -
Gso3g1531 1549 MobiDBLite consensus disorder prediction 883 900 - -
Gso3g1531 1549 Gene3D - 281 496 IPR038718 -
Gso3g1531 1549 CDD SF2_C_SNF 566 710 - -
Gso3g1531 1549 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1189 1536 - -
Gso3g1531 1549 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 19 1104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1531 Gso-Chr3 41212097 41231710 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso3g1531 SNF2_N 7.9e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1531 - K11643 gmx:100813574 2886.29