Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1530 ATGGAAGCAACTAATGGCCACCAAAACGGTTCATTTTGCTTGTCCACTGCCAAGGGAAGTAGTGATCCCTTGAACTGGGGAGCGGCGGCGGAGGCGATGAAGGGGAGTCACCTGGACGAGGTGAAGCGCATGGTGGCCGAGTACCGCAAGCCGGTGGTCCGGCTCGGCGGAGAGACTCTCACCATCGCTCAGGTGGCCGCCGTGGCCGGACACGACCACGGCGTGGCGGTGGAGCTCTCAGAGTCAGCGAGAGAAGGAGTAAAGGCGAGCAGTGAGTGGGTGATGAACAGCATGAACAACGGCACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACGTCACACCGCCGAACCAAACAGGGTGGTGCTCTGCAGAAGGAACTCATCAGATTCTTAAACGCTGGAATATTTGGAAATGGAACTGAATCAAGCCATACCCTGCCACACACTGCAACCAGAGCAGCCATGTTAGTGAGAATCAACACTCTTCTTCAGGGGTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTGAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACAGCTTCTGGAGATCTTGTTCCACTTTCTTACATTGCTGGCTTGCTAACTGGCAGACCCAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAACGCAAAAGAAGCTTTTGAATTGGCTAGCATCAACTCTGAGTTCTTTGAATTGCAACCCAAGGAAGGTCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGATTAGCTTCTATGGTACTCTTTGAGGCTAATATACTAGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCTGAAGTGATGCAGGGGAAACCTGAATTCACTGACCATTTGACACACAAGCTAAAGCACCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCATATCTTGGATGGAAGTTCCTACATGAAAGCTGCTAAGAAGTTGCATGAGATTGATCCCTTGCAAAAGCCAAAACAAGATAGATATGCCCTTAGAACTTCACCACAGTGGCTTGGTCCTCTTATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGAGAGATCAACTCTGTGAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGCAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCACTTGCATCTATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTTTTACAACAATGGATTGCCTTCAAATCTCACTGCTAGCAGAAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTACTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACTACCCATGTCCAAAGTGCTGAGCAACACAACCAGGATGTCAACTCTTTGGGCTTGATCTCATCTAGAAAGACAAATGAAGCCATCGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTAGAGGAGAATTTGAAAAACTCGGTCAAGAACACCGTGAGCCAAGTTTCCAAAAGGATTCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCAAGATTTTGTGAGAAGGATCTGCTAAAAGTGGTTGATAGGGAGTATATATTTTCCTACATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAACTTAGGCAAGTGCTTGTAGATCATGCATTGGTAAATGCAGAGAGTGAGAAGGATGTGAACTCGTCCATCTTTCAAAAGATAGCAATCTTTGAGGAAGAGTTGAAGAATCTCTTGCCAAAAGAGGTTGAAGGTGCAAGGGCTGCTTATGAGAGTGGCAAAGCTGCAATTCCAAACAAGATCCAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAATTAGGGACTGGGTTGCTAACTGGAGAAAAGGTGAGGTCACCGGGTGAAGAGTTTGACAAATTATTCACAGCAATGTGCCAAGGGAAAATTATTGATCCTCTTATGGAGTGCCTTGGGGAGTGGAATGGAGCTCCTCTTCCAATCTCTTAA 2142 0.4617 MEATNGHQNGSFCLSTAKGSSDPLNWGAAAEAMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAGHDHGVAVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFELASINSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVSKRILTTGVNGELHPSRFCEKDLLKVVDREYIFSYIDDPCSATYPLMQKLRQVLVDHALVNAESEKDVNSSIFQKIAIFEEELKNLLPKEVEGARAAYESGKAAIPNKIQECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLMECLGEWNGAPLPIS* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1530 713 CDD PAL-HAL 58 523 IPR001106 -
Gso3g1530 713 Gene3D - 13 259 IPR024083 -
Gso3g1530 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Gso3g1530 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Gso3g1530 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
Gso3g1530 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 702 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gso3g1530 713 Gene3D - 526 647 IPR023144 -
Gso3g1530 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 17 712 - -
Gso3g1530 713 SUPERFAMILY L-aspartase-like 22 712 IPR008948 GO:0003824
Gso3g1530 713 PANTHER HISTIDINE AMMONIA-LYASE 17 712 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1530 Gso-Chr3 41205600 41209460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1530 20 712 Monolignol Biosynthesis Gene Families AT2G37040 84.416 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1530 K10775 - gmx:100788438 1395.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1530 3 41205600 41209460 Gso20g1466 20 44969322 44975375 ECH
Gso3g1530 3 41205600 41209460 Gso3g1530 3 41205600 41209460 ECH
Gso3g1530 3 41205600 41209460 Gso10g0501 10 5452817 5457282 PCT