Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1524 ATGGCGAAAGACATCGAAACTGAGGTCCAAAGTGGGCTGCCACACAAGGACTACCACGACCCACCCGCCGCCGCATTCTACGACCCCGCCGAGCTCCGCAAGTGGTCCTTCTACCGCGCCCTCATCGCCGAGTTTGTCGCCACTCTCCTCTTCCTCTACGTCACCATCCTCACCGTCATCGGCTACAATCACCAGACCGCCACCGGCAGCCCCGACCTCTGCAATGGCGTCGGCGTCCTCGGCATCGCTTGGGCCTTCGGAGGCATGATATTTGTCCTTGTCTATTGCACTGCTGGGATATCAGGGGGACACATAAACCCGGCGGTGACGTTTGGGTTGTTTCTGGCGAGGAAGGTGTCGCTTATAAGAGCAGTTGGGTACATGGTGGCTCAGGTGTTGGGGGCCATAAGTGGTGTGGGGCTAGTGAAGGCTTTACAGAAGAGCTACTACAACAGGTACAATGGTGGCGTGAACATGCTCGCTGATGGGTACAGCAAAGGAACCGGTTTGGGAGCTGAGATTATTGGCACATTTATTCTTGTCTACACCGTCTTCTCTGCTACCGATCCCAAGAGAGTGGCAAGAGACTCCCATGTTCCCGTGTTGGCACCACTTCCAATTGGGTTTGCGGTGTTCATAGTTCACCTGGCCACCATCCCTATCACCGGCACTGGCATCAACCCAGCCAGAAGCCTAGGGCCTGCTGTCATATTCAACAACGAGAAGGCATGGGATGACCAGTGGATCTTCTGGGTTGGACCCTTCATCGGTGCTGCCATTGCTGCATTCTACCACCAGTCCGTGCTGAGGGCCCAAGCAGCAAAGGCTCTCGGGTCTTTCAGGAGCTCCTCAAACCTGTAA 861 0.5587 MAKDIETEVQSGLPHKDYHDPPAAAFYDPAELRKWSFYRALIAEFVATLLFLYVTILTVIGYNHQTATGSPDLCNGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQVLGAISGVGLVKALQKSYYNRYNGGVNMLADGYSKGTGLGAEIIGTFILVYTVFSATDPKRVARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGPAVIFNNEKAWDDQWIFWVGPFIGAAIAAFYHQSVLRAQAAKALGSFRSSSNL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1524 286 CDD MIP 39 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1524 286 Gene3D Glycerol uptake facilitator protein. 25 286 IPR023271 -
Gso3g1524 286 PANTHER AQUAPORIN PIP2-4-RELATED 1 283 - -
Gso3g1524 286 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1524 286 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1524 286 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1524 286 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1524 286 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1524 286 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1524 286 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Gso3g1524 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 283 IPR034294 -
Gso3g1524 286 SUPERFAMILY Aquaporin-like 31 270 IPR023271 -
Gso3g1524 286 Pfam Major intrinsic protein 31 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso3g1524 286 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1524 Gso-Chr3 41110253 41112048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1524 1 286 Major Intrinsic Protein MIP AT3G53420 77.003 6.35e-161 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1524 K09872 - gmx:100785783 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1524 3 41110253 41112048 Gso3g1524 3 41110253 41112048 ECH
Gso19g1509 19 43918375 43920475 Gso3g1524 3 41110253 41112048 GST