Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1522 ATGAGATTGCAACATGGTAGACAAGAGAATCTGTCAAACAGAGAAATAAAGATTTTTAGCTTAGCTCAAATTACAACCTCGGTGTGCCGCCTCTTCTTTCCCTCAATTTCTTGCCATATCTCCAAAACCTTCACGAACCACACACCCAAATCCAACATCGTAGGAACTTTCACGCTTGTCTCGAGCCATGAAGAATTCGTGTTCTTTTTGTACTTGTTTCTCAGCATCTGTCAAAGAACAAACCAAGCACGAATTATGGATTGCATCTGTTATTACCCAACAGAGGAGCCAGATGAAGATAACAATGATGGCAGCTTCCGCATATTCACTTATAGAGAATTGAATTCTGCCACACGAGGTTTTCACCCCTCGGAAAAGATTGGAGAAGGAGGTTTTGGCACTGTCTACAAGGGGCAGCTTCGGGATGGAACTTTTGTGGCCGTGAAAGTGCTTTCGATTGAGCTAGATTCCTTGAGAGGAGAGAGGGAGTTTGTGGCAGAATTGAATACACTAGCAAATGTCAAGCACCAAAATCTTGTCATTCTCCGAGGGTGTTGTGTAGAAGGAGGCCACAGATACATAGTCTACGACTACATGGAAAACAATAGCCTTCGCCACACTTTCTTAGGTTCAGAGCAAAAAAAGATGAATTTCAGCTGGGAAACTCGGAGGGATGTATCCATAGGTGTGGCAAGTGGGCTTGCCTTTCTCCACGAGGAACATCAACCCCATATTGTGCATAGAGATATCAAATCCAGCAATGTTCTTCTTGATCGAAATTTTACACCAAAAGTCTCCGATTTTGGCTTGGCCAAGCTACTAAGAGATGAAAAGTCCCACGTCACTACCCATGTTGCTGGCACATTCGGTTATCTTGCACCAGACTATGCTAGTTCTGGACACTTGACACGAAAATCAGATGTTTATAGCTTTGGAGTTCTACTTTTAGAAATTGTCAGTGGCCAACGCGTGGTAGATTCGTCTCAAAACGGGGAGCGTTTCATAGTTGAGAAGGCTTGGGCAGCATATGAGGCTAATGATCTTCTGAGAATGGTGGATCCCGTGCTGAATAAGAACTATCCCGTGGAAGAAGCGAAACGGTTCCTAATGGTGGGGCTGCGTTGCGTGCAACAAATGGCGAGGCTTAGGCCACGAATGCCAGAGGTTGTGGACATGCTGACCAACAATGTTGAGACGGTAGAGTTTAGTGTTTCACAACCAGGATTTGTCGCTGATCTCAGCAGCGCCAGAATAAGGAAGCAAATGAATCCATCAGAAGAATCAAGTGCTACTGCAGCAACCTTTGCAGACTCCTCTGGATGGTAG 1326 0.4487 MRLQHGRQENLSNREIKIFSLAQITTSVCRLFFPSISCHISKTFTNHTPKSNIVGTFTLVSSHEEFVFFLYLFLSICQRTNQARIMDCICYYPTEEPDEDNNDGSFRIFTYRELNSATRGFHPSEKIGEGGFGTVYKGQLRDGTFVAVKVLSIELDSLRGEREFVAELNTLANVKHQNLVILRGCCVEGGHRYIVYDYMENNSLRHTFLGSEQKKMNFSWETRRDVSIGVASGLAFLHEEHQPHIVHRDIKSSNVLLDRNFTPKVSDFGLAKLLRDEKSHVTTHVAGTFGYLAPDYASSGHLTRKSDVYSFGVLLLEIVSGQRVVDSSQNGERFIVEKAWAAYEANDLLRMVDPVLNKNYPVEEAKRFLMVGLRCVQQMARLRPRMPEVVDMLTNNVETVEFSVSQPGFVADLSSARIRKQMNPSEESSATAATFADSSGW* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1522 441 Gene3D Transferase(Phosphotransferase) domain 1 199 406 - -
Gso3g1522 441 SMART serkin_6 121 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1522 441 ProSitePatterns Protein kinases ATP-binding region signature. 127 149 IPR017441 GO:0005524
Gso3g1522 441 PANTHER RECEPTOR-LIKE KINASE 94 414 - -
Gso3g1522 441 Gene3D Phosphorylase Kinase; domain 1 94 198 - -
Gso3g1522 441 SUPERFAMILY Protein kinase-like (PK-like) 103 411 IPR011009 -
Gso3g1522 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Gso3g1522 441 ProSiteProfiles Protein kinase domain profile. 121 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1522 441 Pfam Protein kinase domain 122 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1522 441 CDD STKc_IRAK 127 395 - -
Gso3g1522 441 MobiDBLite consensus disorder prediction 421 441 - -
Gso3g1522 441 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 94 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1522 Gso-Chr3 41093265 41096002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1522 109 412 Receptor kinase-like Gene Family AT1G56120 49.836 2.36e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso3g1522 Pkinase 8.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1522 - - gmx:100785251 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1522 3 41093265 41096002 Gso3g1522 3 41093265 41096002 ECH
Gso19g1508 19 43904197 43906451 Gso3g1522 3 41093265 41096002 GST
Gso3g1522 3 41093265 41096002 Gso13g1075 13 25219157 25221522 PCT
Gso13g1075 13 25219157 25221522 Gso3g1522 3 41093265 41096002 PCT