Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1521 ATGGGCAACATCTCAAGCGGCGGCAATCCCCGTCGCCGACACAGCGGAGCTTCACGGCGGAGCCACCCGCCGCCGCCGCCGCGGCCCGTTACGCCGCAGCCTGAGATCGCGGCGAATCCATTCGTGTACCATGGTGCTGCTGCACCGTACCCGAACCCTCCTCTGCATTACCCTCAGTACCATTACCCCGGTTACTACCCTCCGGTGCCACCCATGCCTTATCATCCTCATCAACATCAACATCATCATCGACACATGGACCCGGCGTGGATTCAGGGGCATTTCCCTAGTGGGCCCATGATGCCTAACCCTGCACCTTTCGTAGAGCATCAGAAAGCCGTTACAATAAAGAACGATGTCAACATCAGGAAAGAGACCCTTAAGCTTGAACCCGACGTAGAAAATTCTGGCCACTTCCTTGTTTCGTTTTCCTTCGATGCCACCGTTTCTGGCAGCATCACCATATATTTCTTTGCAAAAGAAGGTGAAGGCTGCATCCTCACACCAATGAAGGAAAACCAACTTGCACCAGTGTCTGTGCATTTCGAGCAAGGCCTTGGCCAGAAGTTTAGACAGGCAGCTGGAACTGGTATTGATTTTTCAGTGTTTGAAGAGTCTGAGTTATTGAAAGTGGGTGAAAAGGATGTCTACCCTCTAGCAGTAAAGGCAGACGCATCCCCTGGTAATCATGATGAGTCAGATAGATCTCCAACATCTAGTAACACAAACTCTCAGATTACGCAAACGGTGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTGTCAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTAGAAATTCAACGGAGAATGACCAAGGAAAATGTGTTATTTGCTTGTCAGAGCCCCGAGATACAATTGTCCTTCCCTGCCGGCATATGTGTATGTGTAGCGGATGTGCAAAGGATTCTAGGTTCCAGACAGATAGATGCTCAATTTGCAGACAACCAGTTGAGAGGCTGTTGGAGATATAG 1026 0.4971 MGNISSGGNPRRRHSGASRRSHPPPPPRPVTPQPEIAANPFVYHGAAAPYPNPPLHYPQYHYPGYYPPVPPMPYHPHQHQHHHRHMDPAWIQGHFPSGPMMPNPAPFVEHQKAVTIKNDVNIRKETLKLEPDVENSGHFLVSFSFDATVSGSITIYFFAKEGEGCILTPMKENQLAPVSVHFEQGLGQKFRQAAGTGIDFSVFEESELLKVGEKDVYPLAVKADASPGNHDESDRSPTSSNTNSQITQTVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIRNSTENDQGKCVICLSEPRDTIVLPCRHMCMCSGCAKDSRFQTDRCSICRQPVERLLEI* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1521 341 MobiDBLite consensus disorder prediction 1 35 - -
Gso3g1521 341 SMART ring_2 293 331 IPR001841 -
Gso3g1521 341 MobiDBLite consensus disorder prediction 223 245 - -
Gso3g1521 341 ProSiteProfiles Zinc finger RING-type profile. 293 332 IPR001841 -
Gso3g1521 341 PANTHER MAHOGUNIN 1 341 IPR045194 GO:0061630
Gso3g1521 341 Pfam Zinc finger, C3HC4 type (RING finger) 290 337 - -
Gso3g1521 341 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 293 332 IPR045195 -
Gso3g1521 341 MobiDBLite consensus disorder prediction 20 34 - -
Gso3g1521 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 341 IPR013083 -
Gso3g1521 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 341 - -
Gso3g1521 341 SUPERFAMILY RING/U-box 292 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1521 Gso-Chr3 41084943 41088404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1521 97 312 C3H Transcription Factor Family AT3G09770 61.572 1.10e-94 283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1521 3 41084943 41088404 Gso3g1521 3 41084943 41088404 ECH
Gso19g1507 19 43896512 43899962 Gso3g1521 3 41084943 41088404 GST
Gso3g1521 3 41084943 41088404 Gso13g1074 13 25200912 25205082 PCT
Gso13g1074 13 25200912 25205082 Gso3g1521 3 41084943 41088404 PCT