Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1519 ATGGCCACTGAAGCACATCGTTTTCCCAAGATTAATAATGACCAAGGCTCTTCTAGTATACCTCATAACCCAATTCAAAAGGATGTAGAGTCATCCGAAATAACTGAGGAACTCCCTAGTAGACATGCACATGGTAGAAGGAAAAACCTTATCTTGGAGATACCAACAAGAACACTAGATGAAACAAGAGAGGAATTTTTCAGAACAAACCAACCTCCAACTCCATCTCCTAGAAGCCAAATCAATGAGTTCCAAGGTCCTTTGTCAACCAAAAATATTAAATTTCACAAGATAAGTTCAGATGTTGAAGAGGCTTCCATCCCAGCACTTGACGGTTCCCCCCCGGAGCCACTGCAAGAGCCTATGATTTCAAGAACATTATCACCTAATGAGATGAAAATATCATCCTTACCTGTCACCCCAATTGCTCAGTCAAATCTGGAGTCTGGACATGGAGGGAACATTGCCTATCCAGCAACACATGTTAAGAAAGGACTGCAACTACCAATGCATCGTTCCCGTTCAGTTCCCGTGCTTACTGAAGATGGCAGCACATATGTAGGTGCCATGTTTCGTATTGTTCCTACCACACCACGGTTGACAAAGAGCATTGCCACAACATCTATGAAATCTCCGCCTGACGATACCGTTGAAAATGAGGATGGGGAAGATATTCCTGAAGAAGAAGCCGTCTGCAGAATTTGTTTGATTGAATTGGGAGAAGGTTCTGATACACTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGTGATGTGTGCAAGCAGGAAGTTCAGAACCTTCCTGTCACTCTTCTACGAGTTTTAAATGGCCAAACACTTTACTTGACAAGGAGTAGAAGCCAACAATACAGGGTTTGGCAAAATATTCCCATTCTTGTGATTATCAACATGCTGGCATACTTTTGTTTCCTTGAGCAGCTACTTGTTTCAAGTATGGGATCTGGTGCTGTTGCCATTTCTCTCCCTTTTTCATGTATACTAGGTCTACTTGCAAGCATGACATCCACAATAATGGTGACGTGTGAACATGTTTGGGTTTATGCAATTGCCCAGTTTGTTATGGTGGTTCTCGCTGGACGTCTTTTCTATTCACTGCTTAATAAGCAAGCCGTTCTATCTATCCTACTTGCTACATTTACTGGGTTTGGAGCTGTGATGTGTGGAGCTTATATTCTTATTGAGTTTTTGAAATGGAGAAGACGATGGCTTGGTTCCCAAGAGGTGGTACTGCCTCATTAA 1317 0.4237 MATEAHRFPKINNDQGSSSIPHNPIQKDVESSEITEELPSRHAHGRRKNLILEIPTRTLDETREEFFRTNQPPTPSPRSQINEFQGPLSTKNIKFHKISSDVEEASIPALDGSPPEPLQEPMISRTLSPNEMKISSLPVTPIAQSNLESGHGGNIAYPATHVKKGLQLPMHRSRSVPVLTEDGSTYVGAMFRIVPTTPRLTKSIATTSMKSPPDDTVENEDGEDIPEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVLNGQTLYLTRSRSQQYRVWQNIPILVIINMLAYFCFLEQLLVSSMGSGAVAISLPFSCILGLLASMTSTIMVTCEHVWVYAIAQFVMVVLAGRLFYSLLNKQAVLSILLATFTGFGAVMCGAYILIEFLKWRRRWLGSQEVVLPH* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1519 438 MobiDBLite consensus disorder prediction 29 47 - -
Gso3g1519 438 CDD RING_CH-C4HC3_MARCH 232 280 - -
Gso3g1519 438 ProSiteProfiles Zinc finger RING-CH-type profile. 224 286 IPR011016 GO:0008270
Gso3g1519 438 MobiDBLite consensus disorder prediction 1 47 - -
Gso3g1519 438 MobiDBLite consensus disorder prediction 10 28 - -
Gso3g1519 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 287 IPR013083 -
Gso3g1519 438 Pfam RING-variant domain 232 279 IPR011016 GO:0008270
Gso3g1519 438 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 92 431 - -
Gso3g1519 438 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 17 92 - -
Gso3g1519 438 SUPERFAMILY RING/U-box 228 283 - -
Gso3g1519 438 PANTHER OS02G0165000 PROTEIN 17 92 - -
Gso3g1519 438 PANTHER OS02G0165000 PROTEIN 92 431 - -
Gso3g1519 438 SMART ringv_2 231 280 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1519 Gso-Chr3 41066353 41071677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1519 162 286 C3H Transcription Factor Family AT2G37950 28.148 2.69e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1519 - - gmx:100783117 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1519 3 41066353 41071677 Gso3g1519 3 41066353 41071677 ECH