Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1514 ATGCAAATGATACCCGGAGACCCCTTTTCACTATCCACTTCCCTCCCAGCAGGGCTTCCCAATGAACAAAGCACAAACACAAACCCTAATCCTAATCCTCCACCACCCAACAAAAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCCGAGGTTATTGCTCTTTCGCCAAAGACTCTCATGGCCACAAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTTCAGAGAGACCAGAACCTTCAGCTTCATAGAAGAGGTCACAACCTTCCATGGAAGCTACGACAGAGATCAAACAAGGAGGTTCGGAAGAAGGTATATATCTGTCCAGAGAAAACCTGTGTCCACCACGACGCGGCAAGGGCTCTCGGTGATCTCACCGGAATAAAGAAGCATTACAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAAAAATACGCAGTTCAATCTGATTGGAAGGCTCACACCAAAACCTGTGGCACCAGAGAGTATAAGTGCGACTGTGGCAACCTCTTCTCCAGGAAGGACAGTTTTATTACTCACAGGGCCTTCTGCGATGCCTTAGCTGACGAGAGTTCGAGACTCACCTCAGTTGCTTCAACAAGCCTAAATTTTAAGAACGAAGATGCAACTATGATCAACACACAAGCTAGTTTGTCGACACGTGGATTAATCACTGGCCATGGAATGCAAAATGTTTCACAATTTGGTCCACATGGGTTTCGTTTAATGAACATGGGCACAGACCAGCAAAGACCAAACTTGTCACTATGGTTGAACCAAGGAAATCACCACATTAACAATCCACTTGATGTGGCATTATCATCAAGCTCTTCTGGTTTGCCTGAGGTTGTGCACATGGCACAAGCTAATATTAATAATAATGCCTTAATTGGTTCTTCTTCAGTGTTCTCCAATTTTGGAATGCCTGCTTCTTCAAATTCATCTAATCCAAACCTAATGGGGAAAAAAGGAGATGGTGGAGCTTCAGATTTGGCATCAATGTATTCTGAGAGTCAAAACAAGAATTCAAACTCAACTTCTCCAATGTCAGCCACTGCTCTTTTGCAGAAAGCAGCACAGATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGTGGCAGTTTTGGAGTAATGAGCTCATCTTCCACACAAAGCACTAGTCTCAACAGCAATATTGCAAACCAAAGCTGTGACCAACTTAACCAAGCCTTTCAGAATTTTAATGCGACAAGCAGTAGTAGTGCAACTATGCTGGGAAGTTCTACTAACTTTAGCTCATTGACGCATTCATCAAACGGTTTTGACCAGTTTATGATGCAAAACAAGGTGGAACCAACTCAGTTGAAGCTCCACCATCCTGGCTCAAACTCAGTGGAACATAACTTGACAAGAGATTTTCTTGGCGTGAGTGGAAATGGAGGTGGACATGTACATCATGCATTTCTACCCCAAGAGCTGGCAAAGTTTGCTTCCTTAGGCTCATCAATGGGGTTGAATCAGTTCACTGTAGGCCATCAATGA 1545 0.4395 MQMIPGDPFSLSTSLPAGLPNEQSTNTNPNPNPPPPNKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALADESSRLTSVASTSLNFKNEDATMINTQASLSTRGLITGHGMQNVSQFGPHGFRLMNMGTDQQRPNLSLWLNQGNHHINNPLDVALSSSSSGLPEVVHMAQANINNNALIGSSSVFSNFGMPASSNSSNPNLMGKKGDGGASDLASMYSESQNKNSNSTSPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQSTSLNSNIANQSCDQLNQAFQNFNATSSSSATMLGSSTNFSSLTHSSNGFDQFMMQNKVEPTQLKLHHPGSNSVEHNLTRDFLGVSGNGGGHVHHAFLPQELAKFASLGSSMGLNQFTVGHQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1514 514 MobiDBLite consensus disorder prediction 339 356 - -
Gso3g1514 514 Gene3D Classic Zinc Finger 120 199 - -
Gso3g1514 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Gso3g1514 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 501 - -
Gso3g1514 514 MobiDBLite consensus disorder prediction 318 356 - -
Gso3g1514 514 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Gso3g1514 514 MobiDBLite consensus disorder prediction 1 50 - -
Gso3g1514 514 MobiDBLite consensus disorder prediction 1 26 - -
Gso3g1514 514 Gene3D Classic Zinc Finger 45 119 - -
Gso3g1514 514 MobiDBLite consensus disorder prediction 27 42 - -
Gso3g1514 514 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Gso3g1514 514 SMART c2h2final6 143 163 IPR013087 -
Gso3g1514 514 SMART c2h2final6 108 138 IPR013087 -
Gso3g1514 514 SMART c2h2final6 67 89 IPR013087 -
Gso3g1514 514 PANTHER ZINC FINGER PROTEIN JACKDAW 7 501 IPR033243 GO:0003700
Gso3g1514 514 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1514 Gso-Chr3 41034717 41037649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1514 1 501 IDZ Gene Family AT5G03150 46.995 4.45e-134 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1514 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1514 K25870 - gmx:100812495 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1514 3 41034717 41037649 Gso3g1514 3 41034717 41037649 ECH
Gso19g1500 19 43835259 43838031 Gso3g1514 3 41034717 41037649 GST
Gso3g1514 3 41034717 41037649 Gso13g1070 13 25159315 25162355 PCT
Gso13g1070 13 25159315 25162355 Gso3g1514 3 41034717 41037649 PCT