Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1505 ATGGCGAACGACTCGTCGTTTTTGTTCGCCGGCATTCGTTTCGATAGAAAGAAGTTCGGCGCCGATATTGCCAGGTTCCAGAAAAAAGACAGTGATACTGATTCGGCGATGATTTTGAGCGCCGCCGAAGACGAAGGCGAGAAAACAATAGAACCTCTGGAAGAAGAGAAAGTCGCGGCGTCAACGACGAAGAAGAGGAAGCGCAAGGGAACCTCTTCCGAAACGGTCGAAGGATTCAATGTGTTCAGAAGTTCGACGTCTGTGGCGCAGTCGAATGATGAAGTCCGAGTCATTGAGGAGTCCGTTGAGCTGTATAATAATAATAAGAAGGAACAAAATAAGCAACTCGAGCGGGACGCAATATTCAGAAAGCAACACAAAATTCATGTCTCTGGTTATAACGTGCCGTCTCCGCTTCAAAGCTTTGATGAGTTGAAATCAAGATATAACTGTCCTTCATATTTGTTGCGCAATCTGAAGGAACTTGGATTTAGAGAACCAACACCTATCCAAAGGCAGGCTATACCAGTACTTTTACAAGGTCGTGAATGCTTTGCTTGTGCACCAACTGGCTCTGGGAAAACCCTTGCGTTTGTGTGGCCAATGCTTATGAAGCTTAAGGATCCGGAAAAAGGCAGCATTCGAGCTGTGATCCTTTGTCATACTCGTGAATTATCTGTTCAAACATATCGAGAGTGCAAAAAGCTTGCTAAAAGAAAAAAAATTCGCATTAAGTTGATGACTAAGAATCTTTTAAGAAATGCTGATTTTTCAAAATTTCCATGTGATGTACTAATATCCACACCACTTCGATTACGCTTGGCTATCAAGAGGAAGAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTGGATGAATCGGATAAGCTATTTGAGCCTGAATTATTCAAGCAGATTGATTCTGTTATCAAGGCATGCTCAAATCCCTCAATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGAAAGAATATGGCTTCTGAAACAATAAAGCAAAACTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCCGAGAGTCTAAATCCTCCGGTATTGGTTTTCCTCCAAAGCAAGGAGCGTGCCAAGGAGCTGTGCAGTGAACTTGCATTTGACAGCATTAGAGTTGATGTTATCCATTCTGATTTGTCTCAAGCAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCTGCTGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCGATTACTTTTTACACGGAAGATGACATTCCATTCCTTCGGAATGTTGCTAATCTTATGGCAGCATCAGGCTGTGAGGTTCCTTCCTATCTCATGAAGTTGCGCAAAAAGAAGTGGAAGAAGCACCGACCCAAAAGAGATTCAATCTCCACAAAACCAGACCTATAG 1614 0.4281 MANDSSFLFAGIRFDRKKFGADIARFQKKDSDTDSAMILSAAEDEGEKTIEPLEEEKVAASTTKKRKRKGTSSETVEGFNVFRSSTSVAQSNDEVRVIEESVELYNNNKKEQNKQLERDAIFRKQHKIHVSGYNVPSPLQSFDELKSRYNCPSYLLRNLKELGFREPTPIQRQAIPVLLQGRECFACAPTGSGKTLAFVWPMLMKLKDPEKGSIRAVILCHTRELSVQTYRECKKLAKRKKIRIKLMTKNLLRNADFSKFPCDVLISTPLRLRLAIKRKKIDLSRVEYLVLDESDKLFEPELFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQNLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELCSELAFDSIRVDVIHSDLSQAERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRTGEAITFYTEDDIPFLRNVANLMAASGCEVPSYLMKLRKKKWKKHRPKRDSISTKPDL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1505 537 Gene3D - 85 344 IPR027417 -
Gso3g1505 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 345 IPR014001 -
Gso3g1505 537 MobiDBLite consensus disorder prediction 44 73 - -
Gso3g1505 537 Pfam Helicase conserved C-terminal domain 375 478 IPR001650 -
Gso3g1505 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 490 IPR027417 -
Gso3g1505 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 534 - -
Gso3g1505 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Gso3g1505 537 Coils Coil 95 115 - -
Gso3g1505 537 SMART helicmild6 394 478 IPR001650 -
Gso3g1505 537 CDD SF2_C_DEAD 357 487 - -
Gso3g1505 537 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 534 - -
Gso3g1505 537 MobiDBLite consensus disorder prediction 42 75 - -
Gso3g1505 537 CDD DEADc_DDX52 155 348 IPR044764 GO:0003724|GO:0005524|GO:0030490
Gso3g1505 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 517 IPR001650 -
Gso3g1505 537 SMART ultradead3 163 360 IPR014001 -
Gso3g1505 537 Pfam DEAD/DEAH box helicase 168 332 IPR011545 GO:0003676|GO:0005524
Gso3g1505 537 Gene3D - 345 522 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1505 Gso-Chr3 40945035 40949297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1505 138 510 Eukaryotic Initiation Factors Gene Family AT3G19760 32.267 1.59e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1505 K14779 - gmx:100778285 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1505 3 40945035 40949297 Gso3g1505 3 40945035 40949297 ECH
Gso19g1491 19 43744642 43749812 Gso3g1505 3 40945035 40949297 GST