Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1498 ATGGCCGACGGTCCGGCTAGCCCAGGCGGCGGCAGCCACGAGAGCGGCGACCACAGCCCTCGCTCTAACGTGCGCGAGCAGGACAGGTACCTCCCTATCGCTAACATAAGCCGCATCATGAAGAAGGCACTTCCTGCCAACGGTAAAATCGCAAAGGACGCCAAAGAGACCGTTCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAAAAGAGAAAGACTATTAACGGCGATGATTTGCTCTGGGCGATGGCCACTCTCGGTTTCGAGGATTATATGGATCCTCTTAAAATTTACCTCACTAGATACCGAGAGATGGAGGGTGATACGAAGGGCTCTGCCAAGGGTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAGGGTCAACATATGATGGTTCCAATGCAAGGCCCGGAGTAG 516 0.5194 MADGPASPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYMDPLKIYLTRYREMEGDTKGSAKGGDSSAKRDVQPSPNAQLAHQGSFSQNVTYPNSQGQHMMVPMQGPE* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1498 171 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso3g1498 171 SUPERFAMILY Histone-fold 27 130 IPR009072 GO:0046982
Gso3g1498 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Gso3g1498 171 Gene3D Histone, subunit A 16 154 IPR009072 GO:0046982
Gso3g1498 171 MobiDBLite consensus disorder prediction 118 171 - -
Gso3g1498 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso3g1498 171 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 158 - -
Gso3g1498 171 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Gso3g1498 171 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Gso3g1498 171 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Gso3g1498 171 MobiDBLite consensus disorder prediction 1 28 - -
Gso3g1498 171 MobiDBLite consensus disorder prediction 133 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1498 Gso-Chr3 40891310 40895685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1498 1 169 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.531 1.20e-89 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso3g1498 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1498 K08065 - gmx:100820170 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1483 19 43682979 43687936 Gso3g1498 3 40891310 40895685 GST
Gso3g1498 3 40891310 40895685 Gso10g0427 10 4547613 4550729 PCT
Gso10g0427 10 4547613 4550729 Gso3g1498 3 40891310 40895685 PCT