Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1496 ATGTTGGATCTCAACCTCAACGCCGATTCTGCCTCCGACGCGCAAATGGAGAGCTCCGGCAGCTTCAATTCCTCCGTCGTCAATGCCGCCGACACCGACGACTCCTGCTCCTACGGCGACGCCGTCGCCTACAACTTCGCCATCCTCAACACCACCACCACCGCCACCTCCGACGGACCTCCCCTGGCCGCCGCCGGAGAATCCTCCGTTCGCACCATCCAGCTCTTTCCGGCGGTCGAATCGGGAGCCTCGCCGGCGTGGCTGGATTTTTCGTCGAAGGTGGATCAGAACGGTGCTCCGCAGGAGCAGAGGATCTCTCCCCGGCAACCGCCGGTGAAGAAGAGCCGGAGAGGACCGCGGTCGCGAAGCTCGCAATATCGCGGCGTTACATTCTATCGCAGAACCGGAAGATGGGAATCGCACATTTGGGACTGTGGGAAACAAGTGTACTTGGGTGGATTTGACACAGCGCATGCTGCGGCAAGGGCTTATGATCGAGCTGCGATCAAGTTCCGTGGCGTTGATGCGGATATCAATTTCAACGTTAGCGATTACGATGAAGATATAAAGCAGATGAGTAACTTCACGAAGGAGGAGTTTGTGCATATTTTGCGGCGACAGAGCACTGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCACAAGTGCGGGCGATGGGAGGCTCGTATGGGGCAGTTTCTTGGTAAAAAGTATATATATCTTGGGCTATTCGACAGTGAATTAGAGGCTGCAAGAGCGTATGATAAGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAACTTCGAGCCCAGCTTCTATGAAGGGGAGGTAATTTCCCAGTCTGATAATGAAGATAACAAGCAAAGTCTTGATCTGAACTTGGGATTAGCTCCCCCTTCTTACTCTGATGGTCAAATCAAGAACACACCCAGCAATGGGAGTGGTATGATAACTCCGCACAGCTGGGATAATATCCCTCTCGACAAGAGAGTAATGTTTGAGCACTCTGCATCAAGATCACTGACCGTTCAGCCATCTCATCATGGCTTCTCCGTAGCATCTGGGCAACATCCTTCCGTCTGGAATGGTAGCAATTTCTTTCCTATCTACGAGGAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCAGTGCCAAATTGGGCATGGCAAGTCAAAGGTCCTTATGGCGGGGCAACTCTTACTCCACCCCTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATATTACCATCAGCTGCGGATACTCAAATTCGTTTTCCAAACATGACATTCCTCCACTCACATTTTCCACCATCAATCACTAACTCCGGCACCATATCCCCTTTCTTCTGCGGTAGCTGA 1380 0.5152 MLDLNLNADSASDAQMESSGSFNSSVVNAADTDDSCSYGDAVAYNFAILNTTTTATSDGPPLAAAGESSVRTIQLFPAVESGASPAWLDFSSKVDQNGAPQEQRISPRQPPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDKAAIKCNGREAVTNFEPSFYEGEVISQSDNEDNKQSLDLNLGLAPPSYSDGQIKNTPSNGSGMITPHSWDNIPLDKRVMFEHSASRSLTVQPSHHGFSVASGQHPSVWNGSNFFPIYEETAIEKRMEAAPVPNWAWQVKGPYGGATLTPPLSTAASSGFPSTILPSAADTQIRFPNMTFLHSHFPPSITNSGTISPFFCGS* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1496 459 SUPERFAMILY DNA-binding domain 216 275 IPR016177 GO:0003677
Gso3g1496 459 ProSiteProfiles AP2/ERF domain profile. 217 274 IPR001471 GO:0003700|GO:0006355
Gso3g1496 459 CDD AP2 125 183 IPR001471 GO:0003700|GO:0006355
Gso3g1496 459 SMART rav1_2 125 187 IPR001471 GO:0003700|GO:0006355
Gso3g1496 459 SMART rav1_2 217 280 IPR001471 GO:0003700|GO:0006355
Gso3g1496 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 451 - -
Gso3g1496 459 ProSiteProfiles AP2/ERF domain profile. 125 181 IPR001471 GO:0003700|GO:0006355
Gso3g1496 459 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700|GO:0006355
Gso3g1496 459 PRINTS Ethylene responsive element binding protein signature 256 276 IPR001471 GO:0003700|GO:0006355
Gso3g1496 459 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Gso3g1496 459 Pfam AP2 domain 216 266 IPR001471 GO:0003700|GO:0006355
Gso3g1496 459 Gene3D AP2/ERF domain 216 275 IPR036955 GO:0003700|GO:0006355
Gso3g1496 459 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Gso3g1496 459 CDD AP2 216 276 IPR001471 GO:0003700|GO:0006355
Gso3g1496 459 MobiDBLite consensus disorder prediction 90 104 - -
Gso3g1496 459 MobiDBLite consensus disorder prediction 90 126 - -
Gso3g1496 459 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 451 - -
Gso3g1496 459 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1496 Gso-Chr3 40860169 40863375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1496 105 341 AP2-EREBP Transcription Factor Family AT4G36920 70.000 2.90e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso3g1496 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1496 K09284 - gmx:100808212 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1481 19 43644494 43648971 Gso3g1496 3 40860169 40863375 GST