Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1494 ATGGCAATGGCGCCTTCAACTTCCAATAGTGGGTCTGGAAAGAAGGTTAGAAAGCCTTATACTATTACCAAGTCAAGGGAGAGCTGGTCCGAGGAAGAACACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTTGGTTCAAAAACAGTTATTCAGATCAGAAGTCATGCCCAGAAGTACTTCTTGAAAGTTCAAAAGAACGGGGCAGTAGCACACGTGCCTCCTCCTCGGCCTAAGCGTAAAGCTTCTCATCCTTATCCACAAAAGGCATCCAAAAATGTTTTGTTGCCATTGCCAGCTTCCATGGCTTATGTTTCTTCCACTAGTACCCTTCCACCTGGGTATGTCACATGGGATGAAAATTCCTTGCTCATGAATTCTGGATCCAACAAATCAGTGCCTTGTAATGATGAGCTCGCCTATCTTCTTGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACGAATTGGTCACAGCAGTCCTAGTGGTGTTGGGAACTCTACTAGAAATCTGCCTGCTACTGAGATGGCAAAACAAGGGAAACAGGCTCAGGTGATTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTTTTTGATCCAGACACAAAAGGTCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAAAAACCTCACTGTCAATTTGTCTAGTCCTGACTTTGAGCCAGTTGTAAGTTTCAAAAGGAAGGCCATGTCATCATACGATGTCAATACAAATACAGTAGGAGTTACCGCAGGAATCGACGTCAAGAAGCAGACAAATGATCTATCATGTCAAACAGCTTGA 882 0.4206 MAMAPSTSNSGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGAVAHVPPPRPKRKASHPYPQKASKNVLLPLPASMAYVSSTSTLPPGYVTWDENSLLMNSGSNKSVPCNDELAYLLGNEADIGSKGITRIGHSSPSGVGNSTRNLPATEMAKQGKQAQVIHGLPDFAEVYSFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMKNLTVNLSSPDFEPVVSFKRKAMSSYDVNTNTVGVTAGIDVKKQTNDLSCQTA* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1494 293 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Gso3g1494 293 MobiDBLite consensus disorder prediction 1 30 - -
Gso3g1494 293 SMART sant 25 73 IPR001005 -
Gso3g1494 293 MobiDBLite consensus disorder prediction 1 16 - -
Gso3g1494 293 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Gso3g1494 293 CDD SANT 28 71 IPR001005 -
Gso3g1494 293 Gene3D - 29 76 - -
Gso3g1494 293 PANTHER SWI/SNF COMPLEX-RELATED 3 287 - -
Gso3g1494 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Gso3g1494 293 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Gso3g1494 293 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Gso3g1494 293 PANTHER PROTEIN REVEILLE 8 3 287 - -
Gso3g1494 293 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1494 Gso-Chr3 40839732 40844646 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso3g1494 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1494 - - gmx:100807156 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1479 19 43629054 43632794 Gso3g1494 3 40839732 40844646 GST
Gso3g1494 3 40839732 40844646 Gso10g0423 10 4492809 4498209 PCT
Gso10g0423 10 4492809 4498209 Gso3g1494 3 40839732 40844646 PCT