Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1492 ATGCCGCCGAAGCAGCAATCAAAAGCTGATCTTGCGAAGAAGCAGAAGATCGTAGAGGACAAAACCTTCGGTCTCAAAAACAAGAACAAGAGCAAAAATGTCCAGAAATACGTCCAAAACCTCAAGCAATCCGTGCAACCAAATCCCGACTCTTCAAAACTCGCTGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGATAAGGAGTTAAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAGGTGCCAGTTGGTGTTGATCCTAAGTCCATATTGTGTGAGTTTTTCAAAGTGGGGCAGTGTACCAAGGGCTTCAAGTGCAAGTTCTCCCACGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTATAGTGATAAGCGTGACGAGGAAACAATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTAGTAGAGTCGAAGAAAACCGAGTATAATCAGAACAAACCAACTGACATAGTCTGTAAATACTTTTTGGACGCAGTGGAGAAGAAGCAATATGGTTGGTTCTGGGTCTGCCCCAATGGTGGTAAGAATTGCCACTATAGACATGCCCTTCCCCCTGGATACGTTTTAAAATCTCAAATGAAGGCTCTATTAGAGGAGGAATCTGAAAAAATAACAATAGAGGAGGAGATTGAAAATCAGCGCGCCAAAGTGACAACTACAACTCCTATGACTCCTGAGTTATTCATGCAATGGAAGAAAAAGAAGATAGAAGAAAGAGATGCCAATTTGGCTGCACAACAGGCAGAAAGAGCTAAGAATGATCGCATGAGTGGTCGTGAGCTATTTTTGTCAGATGCTAGCTTGTTTGTGGATGATGATGAAGCATACGACAAGTACCAAAGAGAACCAGAATCTGAATCTGGCGACACTGAACAGAATGCGAATGGTAATGCTACTGAAGATGGTCCCAGCACCTTGATAGCTAGTGCTGATGTTGATGATGACGACGAACTGGACATGGACGAGTTGGATGAATTAGAAGCAAGCTTATCAAAGACATCAATACAAATAAAGGAGTTAGGAGCTGAAACTTAA 1071 0.4239 MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPNPDSSKLAAKKKKEEEKAKDKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRDEETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEESEKITIEEEIENQRAKVTTTTPMTPELFMQWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSDASLFVDDDEAYDKYQREPESESGDTEQNANGNATEDGPSTLIASADVDDDDELDMDELDELEASLSKTSIQIKELGAET* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1492 356 Coils Coil 246 266 - -
Gso3g1492 356 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Gso3g1492 356 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Gso3g1492 356 Coils Coil 335 355 - -
Gso3g1492 356 Gene3D - 87 202 - -
Gso3g1492 356 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 355 - -
Gso3g1492 356 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Gso3g1492 356 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 355 - -
Gso3g1492 356 Pfam DRG Family Regulatory Proteins, Tma46 215 294 IPR032378 -
Gso3g1492 356 Coils Coil 208 228 - -
Gso3g1492 356 Coils Coil 51 71 - -
Gso3g1492 356 MobiDBLite consensus disorder prediction 301 316 - -
Gso3g1492 356 MobiDBLite consensus disorder prediction 289 331 - -
Gso3g1492 356 MobiDBLite consensus disorder prediction 40 63 - -
Gso3g1492 356 Gene3D - 203 279 - -
Gso3g1492 356 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Gso3g1492 356 SMART c3hfinal6 158 195 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1492 Gso-Chr3 40830755 40833731 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso3g1492 DFRP_C 2.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1492 - - gmx:100806617 653.284