Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1489 ATGGATATCAAGGAAGCACAAAGGGTGGTCATTTCCAAACCAGTTGCTTCAAGGCCAACTTGTTCTACTTTCAAATCTTTCTCAGAGCTCCTAGCAGGTGCAATCAATGTTTCTCCCGCTATTGAATCTTCTCCAACTACAGTTTCTGCCATTAGACCAAAGACAGTGAGGTTCAAGCCAGCAATGAATCAACCCCCTGCTGGGTTTGTTTCTTCTCAGGCTGATACTTTTGGAGCTGCACTCGATAATTCTTCTGACATGAGTCCTAAACTTGACACCAAACAGTCCCTCATATACAAGCCAACAGCAAAACTCGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGAGTATTACCCCGCAAACAGAAACAAATTATCAGAGCAGTGAACCTAGTAAGATGGTGCAGCAGAACATAGAGGAGGACCAAAAAGCTTTAACATCCTCAGTGAATTGTGATCGACCTTCTTATGATGGATACAATTGGAGGAAATATGGTCAGAAGCAAGTGAAAGGGAGCGAGTACCCGCGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGAATATTGCAGAAATTGTTTATAAAGGTGAACACAACCATTCGAAGCCACAGCTTCATAAGCGAAACTCAGCAGCAGGGACACAAGGATCAGGGGTTATGTCTGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAACGAAGGCAATGAAGTTAGAATTGAGAACACAGGATTGTCTATGCATTCAGATTATTATGTCAAAGTTCCACAGCCTAATGATTCTTCATTAAATATTGGTGCAACTAATGCTGGTGGAGGAAGCATGGAAAACTCTTGTGGTCTAAGTGGGGAATATGAGGAAGGAAGCAAGGGATTTGAGGCACAGGAAGATGAACACAGAAGTAAAAGAAGGAAAAATGAGAATCAATCCAATGAAGCAGCATTATCAGAGGAAGGTTTAGTAGAGCCGCGGATTGTGATGCAAAGTTTTACGGATTCTGAAGTTCTTGGAGATGGCTTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAAGGCAATCCATACCCCAGAAGTTACTTTAGATGTACTAATATCATGTGTAACGTACGCAAACACGTGGAGAGAGCAATAGATGACCCGAGATCATTTGTGACTACATATGAGGGAAAGCACAATCATGAGATGCCACTCAAGAACACAGGAACTGTAGCATCTGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATGA 1308 0.4182 MDIKEAQRVVISKPVASRPTCSTFKSFSELLAGAINVSPAIESSPTTVSAIRPKTVRFKPAMNQPPAGFVSSQADTFGAALDNSSDMSPKLDTKQSLIYKPTAKLVSKTTVSLLANMSITPQTETNYQSSEPSKMVQQNIEEDQKALTSSVNCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGNIAEIVYKGEHNHSKPQLHKRNSAAGTQGSGVMSDGMVQDMWSNSHSERNEGNEVRIENTGLSMHSDYYVKVPQPNDSSLNIGATNAGGGSMENSCGLSGEYEEGSKGFEAQEDEHRSKRRKNENQSNEAALSEEGLVEPRIVMQSFTDSEVLGDGFRWRKYGQKVVKGNPYPRSYFRCTNIMCNVRKHVERAIDDPRSFVTTYEGKHNHEMPLKNTGTVASERDSQASLSKDKP* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1489 435 SMART WRKY_cls 157 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1489 435 SMART WRKY_cls 353 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1489 435 PANTHER WRKY TRANSCRIPTION FACTOR 44 7 416 - -
Gso3g1489 435 MobiDBLite consensus disorder prediction 219 236 - -
Gso3g1489 435 MobiDBLite consensus disorder prediction 210 236 - -
Gso3g1489 435 ProSiteProfiles WRKY domain profile. 159 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1489 435 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 416 IPR044810 GO:0003700
Gso3g1489 435 ProSiteProfiles WRKY domain profile. 348 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1489 435 Coils Coil 309 329 - -
Gso3g1489 435 MobiDBLite consensus disorder prediction 306 328 - -
Gso3g1489 435 Pfam WRKY DNA -binding domain 159 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1489 435 Pfam WRKY DNA -binding domain 355 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1489 435 MobiDBLite consensus disorder prediction 282 336 - -
Gso3g1489 435 SUPERFAMILY WRKY DNA-binding domain 346 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g1489 435 Gene3D WRKY domain 141 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g1489 435 Gene3D WRKY domain 339 414 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g1489 435 MobiDBLite consensus disorder prediction 407 435 - -
Gso3g1489 435 SUPERFAMILY WRKY DNA-binding domain 156 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1489 Gso-Chr3 40805402 40814797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1489 92 414 WRKY Transcription Factor Family AT2G37260 47.863 6.17e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso3g1489 WRKY 2.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1489 - - gmx:100127379 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1474 19 43583599 43592270 Gso3g1489 3 40805402 40814797 GST