Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1488 ATGGGTTGGATTCCCTGTTCTGGATATTCTGGCACTAAGAACAAGGTTGAGAAGATGGAAGTTCAGGATAGTCTCGTTGGCCAGATCAAAGCCACCCCAGGAAAGTTGAAAAGGAATTCATCCACGAAATCCAAAGATACATCTAAAAATGGGAACCCTGATCACATTGCAGCACAGACATTTGCGTTCCGTGAGTTGGCAACTGCAACTAGAAATTTTAGAAATGATTGTCTTTTGGGAGAGGGAGGCTTTGGTAGAGTATACAAAGGGCGTTTGGAAAGTATTAATCAGGTTGTTGCGATTAAGCAACTTGACCGAAATGGACTGCAAGGGAATAGGGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCATCCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATGCTTGGAAGACCACTTGCATGACATTCCTCCTGGCAAGAAACGACTTGACTGGAACACGCGGATGAAAATAGCTGCTGGGGCAGCAAAGGGATTGGAATATCTACATGACAAAGCTAATCCTCCTGTCATATACCGAGACTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGGTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGTCCAGTTGGGGAAAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGAGTAGTTCTTCTGGAAATAATTACCGGAAGGAAGGCAATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAAAGATCGAAGAAAGTTTTCACAAATGGCCGATCCAACACTCCACGGTCAATATCCTCCAAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAACAGGCTAACTTGCGTCCAGTCATAGCCGATGTTGTCACAGCACTGTCTTACCTTGCTTCACAAAAATATGACCCCAATACACACACATTCCAAAGCTCTCGCCATGCTCCCAGTACTCCTCCTAGAACCAGGAGGGGGATATGA 1140 0.4368 MGWIPCSGYSGTKNKVEKMEVQDSLVGQIKATPGKLKRNSSTKSKDTSKNGNPDHIAAQTFAFRELATATRNFRNDCLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGCLEDHLHDIPPGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDRRKFSQMADPTLHGQYPPRGLYQALAVAAMCVQEQANLRPVIADVVTALSYLASQKYDPNTHTFQSSRHAPSTPPRTRRGI* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1488 379 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1488 379 Gene3D Transferase(Phosphotransferase) domain 1 150 368 - -
Gso3g1488 379 MobiDBLite consensus disorder prediction 32 54 - -
Gso3g1488 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Gso3g1488 379 SMART serkin_6 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1488 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Gso3g1488 379 SUPERFAMILY Protein kinase-like (PK-like) 56 347 IPR011009 -
Gso3g1488 379 CDD STKc_IRAK 79 347 - -
Gso3g1488 379 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 377 - -
Gso3g1488 379 MobiDBLite consensus disorder prediction 358 379 - -
Gso3g1488 379 PANTHER OS07G0668900 PROTEIN 1 377 - -
Gso3g1488 379 Gene3D Phosphorylase Kinase; domain 1 42 149 - -
Gso3g1488 379 Pfam Protein tyrosine and serine/threonine kinase 78 281 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1488 Gso-Chr3 40799154 40802390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1488 39 352 Glycoside Hydrolase AT3G07070 68.790 9.36e-163 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso3g1488 PK_Tyr_Ser-Thr 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1488 - - gmx:100818024 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1473 19 43575630 43578816 Gso3g1488 3 40799154 40802390 GST
Gso3g1488 3 40799154 40802390 Gso10g0418 10 4435813 4439371 PCT
Gso10g0418 10 4435813 4439371 Gso3g1488 3 40799154 40802390 PCT