Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1484 ATGGTTAGATTCTGCTGGAGACCAGCTGCGGTGGGTGATGATGGAGATGTGAATGGTCGAGTTGAAGGGCTTCTATGGTACAAGGATTTGGGGAACCATCTTTATGGAGATTTCTCAATGGCTGTGATTCAAGCTAATAGTTCATTAGAGGATCGTAGCCAACTTGAATCTGGACCATTGACTTCTGACTATTTGGGTCCTCAAGGAACCTTTGTAGGTGTATATGATGGTCATGGTGGCACCGCAGCCTCGCAGTTTGTCAGTGACAATCTTTTCTGCAATTTCAAAGATTTGGCTGGTGAACATCAAGGCATATCGGAGAATGTTATACAAAGTGCCTTTTCAGCAACAGAAGAGGGTTTTCTGTCTGTTGTGAGGAAACAGTGGCTAAGCAAGCCACAGATAGCATCCGCAGGTACATGTTGTTTGGCGGGGATAATTTGCAACGGCATGCTATACGTTGCAAATGCCGGAGACTCGAGGGCGGTGTTGGGGAGAGTGGAGAGAGCAACAAGGGAAACAACAGCTATCCAATTGTCTGCAGAGCACAACGTTAACATCCAAACTGAGAGAGATGATGTTCGGACCAAGCACCCTCATGATCCACAAATCGTGGTTATGAAACACAATGTTTGGCGTGTGAAAGGCATCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGACGAATTTAACAGGGAGCCTCTACCGAACAAGTTTAGACTACCTGAACCCTTCTTCAAGCCAATTCTTAGTTATGAACCAGCAATATCAGTGCATAAACTTCGCCCTGAAGATCAATTTATCATCTTTGCTTCTGATGGTTTATGGGAGCAACTCAGCAACCAAGAGGTTGTGAATATAGTCAGCAACAGCCCTCGGAATGGAATTGCTAGGCGGCTTGTGAAAGCGGCGCTTCGAGTAGCGGCTAGGAAGAGAGAAATGAGAGTCTCAGACCTTCAAAAGATTGAACAAGGAGTGAGGAGACACTTCCACGATGACATTACAGTTATTGTTGTATTTCTAAATCACAAACTCATTGATAATAGCTCTCTCTTCAATTAG 1074 0.4441 MVRFCWRPAAVGDDGDVNGRVEGLLWYKDLGNHLYGDFSMAVIQANSSLEDRSQLESGPLTSDYLGPQGTFVGVYDGHGGTAASQFVSDNLFCNFKDLAGEHQGISENVIQSAFSATEEGFLSVVRKQWLSKPQIASAGTCCLAGIICNGMLYVANAGDSRAVLGRVERATRETTAIQLSAEHNVNIQTERDDVRTKHPHDPQIVVMKHNVWRVKGIIQVSRSIGDAYLKKDEFNREPLPNKFRLPEPFFKPILSYEPAISVHKLRPEDQFIIFASDGLWEQLSNQEVVNIVSNSPRNGIARRLVKAALRVAARKREMRVSDLQKIEQGVRRHFHDDITVIVVFLNHKLIDNSSLFN* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1484 357 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Gso3g1484 357 Gene3D - 28 354 IPR036457 -
Gso3g1484 357 SMART PP2C_4 31 343 IPR001932 -
Gso3g1484 357 ProSiteProfiles PPM-type phosphatase domain profile. 34 345 IPR001932 -
Gso3g1484 357 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 4 356 - -
Gso3g1484 357 Pfam Protein phosphatase 2C 69 314 IPR001932 -
Gso3g1484 357 CDD PP2Cc 35 345 IPR001932 -
Gso3g1484 357 PANTHER ALPHABET, ISOFORM E-RELATED 4 356 - -
Gso3g1484 357 SUPERFAMILY PP2C-like 46 346 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1484 Gso-Chr3 40777325 40780371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1484 1 354 PP2C-type Phosphatase Gene Family AT3G12620 66.667 2.73e-178 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1484 K01102 - gmx:100815902 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1469 19 43552788 43556010 Gso3g1484 3 40777325 40780371 GST
Gso3g1484 3 40777325 40780371 Gso10g0414 10 4386987 4389977 PCT
Gso10g0414 10 4386987 4389977 Gso3g1484 3 40777325 40780371 PCT