Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1477 ATGTCTCGTCTAACACCACCACCACCACCACCACCCAACCCTGTCCTCCAAGACAGGCTTCCTTTCTTCAATCAATCCATGGAGCTAGTCAACCCTCCAACCCGAACCAGATCCAGAACCCTCGGAGACCTCCTTAAACGCGTCCAAGATGCTCAAAACGACATTCCTCTTACACCTCCCCACCATGTTCTCGACCTCTCTTCCTCCTCCACCACCCACCCCTTTGTCCTCTCCTTCACCAACTTAACCTACAGCGTCAACCTCCGCCGCAAGTTTACTTTTTTTCCCGCCACTACCATTTCCACACCCGACCACGAAACCAAACCCAACGGCACCAAGACTCTCCTCAACGACATCTCCGGCGAGGCTAAGGACGGCGAGATCATGGCCGTCCTCGGCGCAAGCGGTTCTGGAAAGTCGACTCTAATCGACGCCCTCGCCGATAGAATCTCAAAAGAAAGCCTCAAAGGCACTGTCACCCTAAACGGCGACGTTTTGGAATCGAGTCTTTTGAAGGTTATCTCCGCTTACGTCATGCAAGACGACCTCCTCTTCCCCATGCTCACCGTTGAAGAAACCCTAATGTTCGCCGCGGAGTTCAGACTCCCTCGCTCCTTCTCCAAGTCCAAGAAAAAGGCCCGCGTCCAAGCCCTCATCGACCAACTCGGCCTCCGCGCTGCCGCTACAACCGTCATCGGTGATGAGGGCCACCGCGGCGTCTCCGGCGGCGAACGCCGCCGCGTCTCGATCGGAACCGACATCATCCACGACCCCATCGTGCTCTTCCTCGATGAACCAACCTCCGGCCTCGACTCCACCAGCGCCTTCATGGTCGTGAAAGTCTTGCAGCGAATCGCTCAGAGCGGAAGCATCGTCATCATGTCCATTCACCAACCTAGCTACAGAATCTTGAGCCTCTTAGACCACTTGATCTTCCTCTCCCACGGAAACACCGTCTTTAGCGGCTCTCCGGCAAACCTCCCCGGTTTCTTCTCCGAGTTCGGCCACCCCATCCCGGAGAACGAAAACCGCACCGAATTCGCACTCGACCTAATCCGCGAACTCGAACAAGAACCAACTGGCACCAAGAGTTTAGTGGACTTCAACAAATCCTGGCAGCTCAAAAACAAAAACCAGGCCCAGAACGGGGCCAAACCGAAATTATCTCTCAAGGACGCCATCAGCGCTAGCATTTCCAGAGGCAAACTCGTGTCCGGCACTAAGAACAACAACTCAACGGCGTTGGTTTCAGTTCCCGCCTTCGCGAATCCGTTTTGGATGGAGATGTTGGTGATTGGAAAACGTTCTTTAACTAACTCAATGAGGATGCCGGAGTTATTCGGGATTCGCTTAGTTGCAGTTCTGGTGACAGGGGCAATCTTGGCAACAATTTTTTTTCACCTGGACGATTCTCCAAAAGGAGTTCAAGAGCGCGTGGGGTTCTTCGCGTTCGCCATGTCCACCACGTTCTACACGTGCGCCGAAGCTATGCCAGTGTTCCTCCAAGAGCGCTACATCTTCATGAGAGAGACCGCCCACAACGCCTACCGTCGCTCGTCCTACGTGCTCGTGCACGCAATCATTTCCCTCCCTTCCTTGCTTTTTCTCTCCCTAGCATTCGCGGCCACCACGTTCTGGGCCGTGGGCCTTGCCGGTGGCAGTTCGGGCTTTCTCTTTTATTTTCTGACCATCCTGGCCTCGTTTTGGGCCGGGAACTCGTTCGTGACGTTCTTATCTGGTGTGGTATCGCACGTGATGATAGGATTCACTGTTGTGGTTGCGATTCTGGCTTACTTTCTTCTCTTCAGCGGGTTCTTCATCAGCAGGGACAGGATCCCTCCGTACTGGATATGGTTCCACTACCTTTCGCTGGTGAAGTATCCGTACGAGGGAGTGCTGCAGAACGAGTTCGATGTGAGGTCTCCGAGGTGCTTCGTAAGAGGGATTCAGATGTTCGACAACACGCCGCTGGGGATGGTGCCGGAGGCGGTGAAGGTGGAGCTGCTGAAGAGTATGAGCGAGACGCTGGGAATGAACATCTCGAGGTCGACGTGCGTAGTTACTGGAGAGGATGTGCTGAAGCAGCAGGGGATTACGCAGCTGAGTAAGTGGAACTGCTTCTGGGTCACGGTGGCTTGGGGGTTCTTCTTTCGCTTCCTCTTTTATTTGGCGCTGCTCTTTGGGAGCAGGAACAAGAGGAGGTAG 2205 0.5442 MSRLTPPPPPPPNPVLQDRLPFFNQSMELVNPPTRTRSRTLGDLLKRVQDAQNDIPLTPPHHVLDLSSSSTTHPFVLSFTNLTYSVNLRRKFTFFPATTISTPDHETKPNGTKTLLNDISGEAKDGEIMAVLGASGSGKSTLIDALADRISKESLKGTVTLNGDVLESSLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSFSKSKKKARVQALIDQLGLRAAATTVIGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILSLLDHLIFLSHGNTVFSGSPANLPGFFSEFGHPIPENENRTEFALDLIRELEQEPTGTKSLVDFNKSWQLKNKNQAQNGAKPKLSLKDAISASISRGKLVSGTKNNNSTALVSVPAFANPFWMEMLVIGKRSLTNSMRMPELFGIRLVAVLVTGAILATIFFHLDDSPKGVQERVGFFAFAMSTTFYTCAEAMPVFLQERYIFMRETAHNAYRRSSYVLVHAIISLPSLLFLSLAFAATTFWAVGLAGGSSGFLFYFLTILASFWAGNSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISRDRIPPYWIWFHYLSLVKYPYEGVLQNEFDVRSPRCFVRGIQMFDNTPLGMVPEAVKVELLKSMSETLGMNISRSTCVVTGEDVLKQQGITQLSKWNCFWVTVAWGFFFRFLFYLALLFGSRNKRR* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1477 734 Pfam ABC-2 type transporter 430 637 IPR013525 GO:0016020|GO:0140359
Gso3g1477 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 332 IPR027417 -
Gso3g1477 734 Pfam ABC transporter 116 268 IPR003439 GO:0005524
Gso3g1477 734 Gene3D - 104 329 IPR027417 -
Gso3g1477 734 PANTHER ABC TRANSPORTER G FAMILY MEMBER 16 37 727 - -
Gso3g1477 734 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 100 340 IPR003439 GO:0005524
Gso3g1477 734 SMART AAA_5 125 340 IPR003593 -
Gso3g1477 734 ProSitePatterns ABC transporters family signature. 240 254 IPR017871 GO:0005524
Gso3g1477 734 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 37 727 - -
Gso3g1477 734 Pfam ABC-2 type transporter 297 429 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1477 Gso-Chr3 40735740 40738374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1477 115 366 Calmodulin-binding Proteins AT2G36910 25.681 1.38e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1477 K05681 - gmx:100803426 1394.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1463 19 43507887 43510515 Gso3g1477 3 40735740 40738374 GST