LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1465	ATGCAGAGACCTAAAGGAAGCAAGCGGGTTCATAGACATAGAAAACTTCAGAGTTTTCCTTCTGATTCAAGTTCTTGCGGTGATGGAGTTGCAGATGAAGATTCGAATTCATTTCAATCCTGGAGATCTTCAAAACAATCGTTTGGAACTCCCATGAAGAAGTTATTAGCAGAAGAACTGTCCCAAGAAACTGAACCCAAAAGAAGAGCTCCAGGTGTCATAGGCAAATTAATGGGTCTTGATGGGTTTCCATTGCAGTTGCCTACATATAAGCATCATAAGGGTGTGTCAGAAAACAATACAAAAGGGACAACACAGGCGGTAAAAACTCGAAGCAGTGGTACATTATCTGGCGGTCGATTGTCTAGGAGAAACTCAAAGCATCAGCAAGAGTTTAAGGATGTGTTTGAGGTCTCAGAGATCCCAAAGATAGATAGCTGTAGGTATTCATTGCAAGGATCTGTAGGGTTGAAGATCACCAATGCTGGGATGTCATTTGTTGAACAGAAGCTCATGGATGCCAAACGCCGAGCAACTTATCAGGATTTACAATCTTCGCAGGATTCCCATGATACACTTGAGATTCTTGACTCTAACCATGATCTTCAGCAAAAATACTTTAAGAGGCCAGATTCTTTGTTTAAAAGGCATCTAGATGATCTGCAAGCTGCCCCTTCCCAATCACATTTTGGTCACGTTGAAGGTACAAAATTATCAAACATAGTGAACTGTGAACACAATGACTTCAGCCGGAAGCCAGATAAGGAGATGAAATGGTTGAATTACAATAGATCTAACCAGAAGCATGATGATGGTTATTCTTGTCATTTTGTCAGAAGACATGCTATTCACAGTTCTCCGAAATCATCAAGGAATCAGTTTAAGGGAAAAAATGTGCCCAATGCAGTCCCAACAAGGATTGTTGTACTAAAACCCAATCTTGAAAAAGTGCAAAGTCCTACCAAAATTGGTTCATCACCTTGTTCTCCATATGCTTTCCTGTCTCAATGTGGAAAGCATGCTGAATTTTCAGATATCAGATTTAGGGAAACTGGACTGAATCAAAGGAAAAATTTGACTGCTAATGCCTGGCATTCAAAGCAAAATTCTTTGGAATCAAGAGAAATTGCAAAGGAAATCACAAGCCAAATGAAAAATAATTTGAATATTGGCTCCATGATATTTTCATCTTCTAGATTTAGAGGATATACTTGGGATGATAGCTCATGTAGTCTTTCTGGGAATCAATCTCCTGATGAATCAGAGGTGACACCTGCAACCTTGGAAAAGTCATTTGAAATATGTAATACTATTAGTCCATCATCTTGTTTTAGTGAATCATTTGTGAGTAGAGAGGCAAAGAAGAGATTATCAGAGAGGTGGAAAATGTCGCTGAAGTTTCAACAAGGCAATTCCATCTCCAGGAGTGGCACACTGGCTGAAATGCTCGCTATCCCTAACAAGGAAATGAAGGCATCTAAATTTGACAGCATCTCTTGTGGGGAAGGTTCACACGATAAAATATCTAGCAATGGTAAACCTGCTGGGTGGGTCGAACCATTGGGTGTTAGCAGTAAGGATGGATATATTGGAAGTTTACCAAGGTCTAAATCACTTCCTGCTTCATCTACTACCTTTGGAAGTCCCAGAACAATATTGCACCATGAAGCACTTTGTGATGATCGATTTATGATGCCAAAGGAAGCTAGTAAACAGGAAAAGAAAAAAGTAGTGAAGCGTCTTGATCAGAGACCGTGTACAAATACCAAAAGGTCAAAATCTGGTCACAAGAAGTGTTCCCCATACTTAAATACAATTCAAAACAAAGTGAAGATTAATCTTGAAGAGAATTTGCCCAAGCAAGAAGTGTTGATTGCTGAATCATTAGCTGAGATCCTCAGAGATACAAGTGCAGTTACTGAAGAAGTTGTTGGTGTGACCAATGAAAATGCAGTTGGTTCATCTGAATCTTCTATTAAGGAGTTATCAGTTGGGTCTTCCAGTAGAAATTATGACCCCTTGCAACCACCTGTATCTGGACTTGATTCTGCATGCTGTATAGGTGCAGATCATCCCAGTCCAGTCTCGGTGCTAGAACCTTCTTTTACAGATGATCTGTCACCTTGTTTAGATTATTTTGAAAGTCTCAATGTTGACATACAAGGGCTTCGAATGCAACTCCAGTTGCTGAAGCTGGAATCTGAAGATTTTGTGGAAGAACCCGTGCTAATTCAAAGTGATGAAGATGGTATGGAGGCATCTACTGGAATTTCAGAAGACAGTGGATTGCTTCAGACTACAGATAGCTGGGAGTCTTCCTACACGATTGATGTCTTGTATGAATCTGGTATTGATAGAGCTCAACCTGATGCATTTTTGGAAGTTGGGGATTCTAGAGAATACCCTGTTAGTCTTTCAGTGTTTGATGAACTTGAAAAGAGGTACTCTGATTGGACTAATTGTTCAAGGTCTGAAAGGAGATTGCTTTTTGATCGTATAAATTTGGGAATTATCAGTATATACGAGCAATTCACGAGTGTACAACCATGGGTAAGCTCTACTACATCCTTAAATCTTTGTTCTAAATTGATTAAAAATGGACTCCAAGACTGTCTTAACATGATGCTGGGGAGCCAAGGAAAAGCAAAGTATACCGCAATGGGAAAGGTGCTGGTTAGCGAATTGCAGTGGTTGAGCTTAAGAGATGACATTGATGGAATAGGTAGGGAAGTTGAGAGCTTGCTACTAGATGATCTGGTGGCAGAGATAGCCGTTACATAG	2781	0.3995	MQRPKGSKRVHRHRKLQSFPSDSSSCGDGVADEDSNSFQSWRSSKQSFGTPMKKLLAEELSQETEPKRRAPGVIGKLMGLDGFPLQLPTYKHHKGVSENNTKGTTQAVKTRSSGTLSGGRLSRRNSKHQQEFKDVFEVSEIPKIDSCRYSLQGSVGLKITNAGMSFVEQKLMDAKRRATYQDLQSSQDSHDTLEILDSNHDLQQKYFKRPDSLFKRHLDDLQAAPSQSHFGHVEGTKLSNIVNCEHNDFSRKPDKEMKWLNYNRSNQKHDDGYSCHFVRRHAIHSSPKSSRNQFKGKNVPNAVPTRIVVLKPNLEKVQSPTKIGSSPCSPYAFLSQCGKHAEFSDIRFRETGLNQRKNLTANAWHSKQNSLESREIAKEITSQMKNNLNIGSMIFSSSRFRGYTWDDSSCSLSGNQSPDESEVTPATLEKSFEICNTISPSSCFSESFVSREAKKRLSERWKMSLKFQQGNSISRSGTLAEMLAIPNKEMKASKFDSISCGEGSHDKISSNGKPAGWVEPLGVSSKDGYIGSLPRSKSLPASSTTFGSPRTILHHEALCDDRFMMPKEASKQEKKKVVKRLDQRPCTNTKRSKSGHKKCSPYLNTIQNKVKINLEENLPKQEVLIAESLAEILRDTSAVTEEVVGVTNENAVGSSESSIKELSVGSSSRNYDPLQPPVSGLDSACCIGADHPSPVSVLEPSFTDDLSPCLDYFESLNVDIQGLRMQLQLLKLESEDFVEEPVLIQSDEDGMEASTGISEDSGLLQTTDSWESSYTIDVLYESGIDRAQPDAFLEVGDSREYPVSLSVFDELEKRYSDWTNCSRSERRLLFDRINLGIISIYEQFTSVQPWVSSTTSLNLCSKLIKNGLQDCLNMMLGSQGKAKYTAMGKVLVSELQWLSLRDDIDGIGREVESLLLDDLVAEIAVT*	927

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1465	926	PANTHER	AFADIN	6	924	-	-
	Gso3g1465	926	Coils	Coil	713	733	-	-
	Gso3g1465	926	MobiDBLite	consensus disorder prediction	1	15	-	-
	Gso3g1465	926	MobiDBLite	consensus disorder prediction	99	123	-	-
	Gso3g1465	926	MobiDBLite	consensus disorder prediction	19	50	-	-
	Gso3g1465	926	Pfam	Protein of unknown function (DUF3741)	168	212	IPR022212	-
	Gso3g1465	926	MobiDBLite	consensus disorder prediction	1	54	-	-
	Gso3g1465	926	MobiDBLite	consensus disorder prediction	95	128	-	-
	Gso3g1465	926	PANTHER	AFADIN	6	924	-	-
	Gso3g1465	926	Pfam	Domain of unknown function (DUF4378)	773	922	IPR025486	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1465	Gso-Chr3	40629774	40635747	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g1465	45	925	TRM (TON1 Recruiting Motif) Superfamily	AT3G53540	33.983	1.48e-120	388

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1465	-		-	gmx:100801297	1835.08

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1453	19	43402400	43409128	Gso3g1465	3	40629774	40635747	GST
	Gso3g1465	3	40629774	40635747	Gso10g0396	10	4196068	4201956	PCT
	Gso10g0396	10	4196068	4201956	Gso3g1465	3	40629774	40635747	PCT

Showing 1 to 3 of 3 entries