Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1462 ATGGAGACGCAGCGAATTATCGAGTTTCCGCATAGGAATATGGACAAGAGGCCAAGGAAGAAGCAACGTTTAACATGGGACATGCACGTGCCTCCTCCTCCTCCTCCTCCACCACCTCTTCCTCCACCCAAGTTGCAGGTTCTTCCTACAATGTATTGCAAGCAGGAGGTTGGGAATGGAGTGGTTCCAAATCATGCTTATCCATCTCTGTTTTACAGGGGAATGCCGCGCAATGGATCACCCCCCTGGAGGCCTGATGATAAAGACGGTCACTACGTTTTTGCCGTTGGTGAAAATTTAACACCTCGATACAAAATTCTCAGTAAAATGGGTGAAGGAACTTTTGGCCAAGTGTTGGAATGTTTGGACAATGAAAAGGAAGAAATTGTGGCAATTAAAGTTGTTCGCTCTATAAATAAGTACCGTGAGGCTGCAAGGACTGAAATTGAAGTCTTGCTGAGGCTAGCCAGACATGATGTTGACGGTGCACATTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAACATTCTTCTTATTTCATCAGAATTCATTAAAGTGCCAGACTATAAGTTTCTATCACGGAATACAAAAGATGGCTCCTATTTCAAGAATCTACCCAAGTCAAGTGCCATTAAGCTCATTGATTTCGGGAGTACATCATTTGAACATCAGGATCACAGTTATGTTGTTTCAACTAGACACTATCGTGCACCAGAAGTTATCTTAGGTCTTGGGTGGAACTATCCTTGTGATCTTTGGAGTGTGGGCTGCATACTGGTTGAGCTTTGTTCTGGAGAGGCACTTTTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAAAGAGTTCTAGGGCCACTACCTCCCCATATGGTGGTCAGGGCCGATCGTCGAGCTGAAAAGTATTTTAAAAGAGGTACACGATTAAGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCGAACCTCATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCCTGCAAGGGCTCCTAAGGTACGACCCTTCAGAACGGCTTAAAGCTAAGGAAGCATTGAGACATCCCTTCTTCTTCACAAGAGATACTAAAAGATATGGCTACCCTTTATAA 1335 0.4307 METQRIIEFPHRNMDKRPRKKQRLTWDMHVPPPPPPPPPLPPPKLQVLPTMYCKQEVGNGVVPNHAYPSLFYRGMPRNGSPPWRPDDKDGHYVFAVGENLTPRYKILSKMGEGTFGQVLECLDNEKEEIVAIKVVRSINKYREAARTEIEVLLRLARHDVDGAHCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLISSEFIKVPDYKFLSRNTKDGSYFKNLPKSSAIKLIDFGSTSFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVVRADRRAEKYFKRGTRLSWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPSERLKAKEALRHPFFFTRDTKRYGYPL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1462 444 PANTHER BNAA07G37640D PROTEIN 1 436 - -
Gso3g1462 444 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 436 - -
Gso3g1462 444 MobiDBLite consensus disorder prediction 1 40 - -
Gso3g1462 444 CDD PKc_CLK 91 432 - -
Gso3g1462 444 MobiDBLite consensus disorder prediction 1 26 - -
Gso3g1462 444 ProSiteProfiles Protein kinase domain profile. 104 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1462 444 SUPERFAMILY Formin homology 2 domain (FH2 domain) 32 42 - -
Gso3g1462 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Gso3g1462 444 SMART serkin_6 104 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1462 444 Gene3D Transferase(Phosphotransferase) domain 1 158 432 - -
Gso3g1462 444 SUPERFAMILY Protein kinase-like (PK-like) 91 435 IPR011009 -
Gso3g1462 444 Pfam Protein kinase domain 104 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1462 444 Gene3D Phosphorylase Kinase; domain 1 91 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1462 Gso-Chr3 40604887 40609400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1462 104 432 Core Cell Cycle Gene Families AT1G76540 26.393 1.15e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gso3g1462 Pkinase 9.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1462 K08287 - gmx:100808061 898.656