Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1459 ATGAACAACAACATGTTAGGAATGAAGAGACGGAGAGATGATAATGAAGGGTCCTTGGATTTGGCAAAATGTCTTATGCTGTTTTCTTGTCCAATAGAAAGCAACAAGACACAACAGAAAAGTTTTGGTTCTGTGGAATTTGAGTGCAAGACGTGCAACCGCAAGTTCTCTTCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAGCTGGAGGGGGAAGAACTGAAAGAACAGGCCAAAAGTCTTAGCTTGTGGAACAAACCCAAAATGCACGAGTGCTCCATTTGTGGCCTTGAATTCTCTCTGGGCCAGGCTCTGGGTGGCCACATGAGAAAACACAGAGCTTCCCTCAACGAAGGGTTTCCTATTATTCCTTCTATCGACCAAGTTATTGCGAAAATCCCGGTTTTGAAAAGGTCGAATAGCACCAGGGTTATGTGCTTGGACTTGGAGTTACACCTGTAG 477 0.457 MNNNMLGMKRRRDDNEGSLDLAKCLMLFSCPIESNKTQQKSFGSVEFECKTCNRKFSSFQALGGHRASHKRQKLEGEELKEQAKSLSLWNKPKMHECSICGLEFSLGQALGGHMRKHRASLNEGFPIIPSIDQVIAKIPVLKRSNSTRVMCLDLELHL* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1459 158 SMART c2h2final6 47 69 IPR013087 -
Gso3g1459 158 SMART c2h2final6 95 117 IPR013087 -
Gso3g1459 158 SUPERFAMILY beta-beta-alpha zinc fingers 47 117 IPR036236 -
Gso3g1459 158 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Gso3g1459 158 Gene3D Classic Zinc Finger 44 117 - -
Gso3g1459 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Gso3g1459 158 Pfam C2H2-type zinc finger 95 119 - -
Gso3g1459 158 Pfam C2H2-type zinc finger 47 72 - -
Gso3g1459 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Gso3g1459 158 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Gso3g1459 158 PANTHER ZINC FINGER PROTEIN ZAT5 8 158 - -
Gso3g1459 158 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 8 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1459 Gso-Chr3 40592014 40592755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1459 8 156 C2H2 Transcription Factor Family AT2G37430 48.148 1.59e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1459 zf-C2H2_6 8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1459 - - gmx:100526897 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1448 19 43368647 43369462 Gso3g1459 3 40592014 40592755 GST
Gso3g1459 3 40592014 40592755 Gso10g0394 10 4165515 4166278 PCT
Gso10g0394 10 4165515 4166278 Gso3g1459 3 40592014 40592755 PCT