Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1458 ATGAAGAGACGGATAGAAAATGAAGAAGCAGAGAGCATAGTTATGGAAGTGTGCAAGAAAATGTTCTCTGAATTAGCAGGAGATATCAATGTCCAAAAAAGTCCAACCCAAGAAGCATTCGAGTGCAAGACCTGCAACCGCAAATTCTCGTCGTTTCAAGCGTTGGGTGGTCACAGGGCTAGCCACAAGAGGCCTAAACTTGAGGATTCTTCTGTGGGTAAACCCAAAATACACGAGTGCTCAATTTGTGGCCTGGGATTCTCTCTGGGTCAGGCACTGGGAGGCCACATGAGAAAACACACAGAATCCATCAATGGAAATGAAAGCTTTTCATTTTCTTCTATAAACCAGGTTGTTGTTGCATCCAGCAGTAGTAGTAGTAGTGCAAGGACAATGTGCTTGGACCTCAACTTAACGCCTTTGGAGAATGACTTGAAGTTCTTGTTCGAGATCACAACCCCACCTAAACTTAATATTTCTTTGTGA 486 0.4342 MKRRIENEEAESIVMEVCKKMFSELAGDINVQKSPTQEAFECKTCNRKFSSFQALGGHRASHKRPKLEDSSVGKPKIHECSICGLGFSLGQALGGHMRKHTESINGNESFSFSSINQVVVASSSSSSSARTMCLDLNLTPLENDLKFLFEITTPPKLNISL* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1458 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Gso3g1458 161 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Gso3g1458 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 101 IPR013087 -
Gso3g1458 161 SMART c2h2final6 78 100 IPR013087 -
Gso3g1458 161 SMART c2h2final6 40 62 IPR013087 -
Gso3g1458 161 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Gso3g1458 161 Pfam C2H2-type zinc finger 39 65 - -
Gso3g1458 161 Pfam C2H2-type zinc finger 78 100 - -
Gso3g1458 161 Gene3D Classic Zinc Finger 66 130 - -
Gso3g1458 161 PANTHER ZINC FINGER PROTEIN ZAT5 31 147 - -
Gso3g1458 161 Gene3D Classic Zinc Finger 36 64 - -
Gso3g1458 161 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 31 147 - -
Gso3g1458 161 SUPERFAMILY beta-beta-alpha zinc fingers 39 100 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1458 Gso-Chr3 40589733 40590401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1458 33 161 C2H2 Transcription Factor Family AT2G37430 50.000 6.44e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1458 zf-C2H2_6 2.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1458 - - gmx:100800759 293.508