Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1457 ATGAAGAGACAGAGAGATTTCGAGGGGTTTGAGAGCATAGATTTGGCAAATTGTCTAATGATGCTCTCTCATCCCCAACAAAATAAGAAACTACTTCAAACAAAAATTGAGGCTGTGAAATTTGAGTGCAAGACATGCAACCGCAAATTCTCTTCCTTTCAAGCATTGGGTGGCCATAGGGCTAGCCACAAAAGGTCGAAACTTGAGGGAGATGAACTCAAAGCACATGCTATATCTCTAAGTTTGGGAAACAAACCCAAAATGCACGAGTGTTCCATTTGTGGACAAGAATTCTCATTGGGACAAGCACTTGGGGGTCACATGAGAAGGCACAGGACAACCATTAACGAAGATTTTTCTTCAATAAAACAGGTTATTACACAAGTACCTGATTTGAAAAGATCGAATAGCACGAGGGTGATTATGTGCTTGGACTTGAACCTAACGCCGTTTGAGAACGACTTGAAGTTGTTGTTTGGAAAGATGGCACCGAATTCTGGTGCCTTAGTTGATTCTTTATAG 522 0.4119 MKRQRDFEGFESIDLANCLMMLSHPQQNKKLLQTKIEAVKFECKTCNRKFSSFQALGGHRASHKRSKLEGDELKAHAISLSLGNKPKMHECSICGQEFSLGQALGGHMRRHRTTINEDFSSIKQVITQVPDLKRSNSTRVIMCLDLNLTPFENDLKLLFGKMAPNSGALVDSL* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1457 173 Pfam C2H2-type zinc finger 89 113 - -
Gso3g1457 173 Pfam C2H2-type zinc finger 41 65 - -
Gso3g1457 173 SUPERFAMILY beta-beta-alpha zinc fingers 41 111 IPR036236 -
Gso3g1457 173 PANTHER ZINC FINGER PROTEIN ZAT5 11 165 - -
Gso3g1457 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Gso3g1457 173 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Gso3g1457 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Gso3g1457 173 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 165 - -
Gso3g1457 173 Gene3D Classic Zinc Finger 38 111 - -
Gso3g1457 173 SMART c2h2final6 89 111 IPR013087 -
Gso3g1457 173 SMART c2h2final6 41 63 IPR013087 -
Gso3g1457 173 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1457 Gso-Chr3 40581877 40587169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1457 1 161 C2H2 Transcription Factor Family AT2G37430 51.190 3.91e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1457 zf-C2H2_6 1.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1457 - - gmx:100806997 350.517