Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1450 ATGGCTTTTTTGTATGGAGCTCAGCGTCTGCTTCGCCACACCCCACTTGTTCATTCCCACTATGCTTCCATTCGTCTCAGCTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTTTCTAGACTGACAAAAGATGAAAACCTTAAGGATGCATTTTCTTCTTTTGGGCAGCTGGTTGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCAAAGGGATTCGCTTTTGTAACTTATACAACCATAGAAGAAGCTGAAAGGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAGCCAAGAGAGCCTAGACCTCCTCAGCAATCACAGTCTCAGCCCTCCGAAATAGGTTTCACTGTCAACAAAACGGTTGGCTGGTGTGGTTGA 420 0.4476 MAFLYGAQRLLRHTPLVHSHYASIRLSSTLTSPKLFVSGLSRLTKDENLKDAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAERAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSEIGFTVNKTVGWCG* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1450 139 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 139 - -
Gso3g1450 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
Gso3g1450 139 PANTHER NUCLEOLAR PROTEIN 8 1 139 - -
Gso3g1450 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Gso3g1450 139 SUPERFAMILY RNA-binding domain, RBD 31 125 IPR035979 GO:0003676
Gso3g1450 139 Gene3D - 21 123 IPR012677 -
Gso3g1450 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1450 Gso-Chr3 40505443 40507644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1450 35 126 Eukaryotic Initiation Factors Gene Family AT3G16380 36.842 4.40e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1450 - - gmx:100804327 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1450 3 40505443 40507644 Gso3g1450 3 40505443 40507644 ECH
Gso19g1440 19 43280742 43283522 Gso3g1450 3 40505443 40507644 GST