Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1445 ATGGCGGCGTCGCGGCGTCTCCGGGACCTCCAATCCCAACCGGCGAACAAGATCTGCGTGGACTGTTCCCAGAAGAACCCGCAATGGGCCTCCGTATCGTACGGCGTCTTCATGTGCCTAGAGTGCTCAGGCAAGCACCGCGGCCTGGGCGTGCACATCTCCTTCGTGCGATCCGTGACGATGGATTCGTGGTCCGAAATCCAGATCAAGAAAATGGAAGCCGGAGGCAACGACAAACTCAACGCCTTCCTCACGCAATACGGCATCCCCAAGGAAACCGACATCGTCGCCAAGTACAACTCCAATGCCGCAGCCGTCTACCGCGACCGCATCCAGGCCCTCGCCGACGGCCGTCCCTGGCGGGATCCCCCAGTCGTCAAGGAAGCCGTCCGCTCCTCCGCATCAAAGGGCAAGCCGCCGCTCTCGGCTGGCAACAACAACAACGGCGGATGGGATAATTGGGACCCGGACGACGGATTCGGATCGGCCAGGGGCGGGGCGGATCTCAGGAGGAACCAGTCCACCGGCGATGTGAGGGGATTCGGAGGCGGCGGGAACGTGTCGAGGTCGAAATCGACTCAGGATATGTACACGCGGGCTGAATTGGAAGCCTCTGCTGCCAACAAAGAAGACTTCTTCGCGCGGAAGAGGGCGGAGAATGAGTCAAGGCCGGAGGGGCTTCCGCCGTCGCAGGGTGGCAAGTATGTTGGATTCGGATCTGGCCCCGCCCCGAACCAGACGGGGGTTAATCAGCAAAACGATTATCTTTCTGTCGTTTCTCAGGGATTTGGTAAATTATCATTGGCTGCTGCTAATGTTGTTCAGGCCGGGACAAAAGAATTCTCTGCTAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATTGGACAAAGGACTTGGGGTATAATGAAAGGGGTCATGGCATTGGCTTCACAGAAGGTTGAGGAATTCGCTAGAGATAACCCGAATTGGATGTCTGATAACTGGCAACGAAATGAAAGTGATAGAAATGGTTTCTACCAGGAGTTCAATCGAGAGAATAATGGCCGAAATTCTTCTACCAGAGAAGGACAACATTCTTCAGGTGGGCAAACTAATACTTTTCACTCAAGCTCTTGGGATGATTGGGGCCACAATGATTCTAGGAAGGAAGAAACAGCTAAAGGATCAGCTCCTCAGTCATCAGGTGGGAAGTTTGATAATAATTATAACTCAAGCTCTTGGGATGATTGGGACCAGGAAGATACAAGGAAGAAAGAACCAGCTAAAGGGTCAGCTGCCCATAGCAGTGATGGTTGGGCTGGATGGGATAATGCCAAAGATGATGGATTTGATGATATCTATGGGAGTGCATCTAATAATAAAGGTGGCGCTCATAATGACAAGTCAGGTGCTGCCTGGACAGGAGGAGGCTTTCTCTAA 1461 0.5264 MAASRRLRDLQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLTQYGIPKETDIVAKYNSNAAAVYRDRIQALADGRPWRDPPVVKEAVRSSASKGKPPLSAGNNNNGGWDNWDPDDGFGSARGGADLRRNQSTGDVRGFGGGGNVSRSKSTQDMYTRAELEASAANKEDFFARKRAENESRPEGLPPSQGGKYVGFGSGPAPNQTGVNQQNDYLSVVSQGFGKLSLAAANVVQAGTKEFSAKVKEGGYDYKVNETVNVVSQKTSEIGQRTWGIMKGVMALASQKVEEFARDNPNWMSDNWQRNESDRNGFYQEFNRENNGRNSSTREGQHSSGGQTNTFHSSSWDDWGHNDSRKEETAKGSAPQSSGGKFDNNYNSSSWDDWDQEDTRKKEPAKGSAAHSSDGWAGWDNAKDDGFDDIYGSASNNKGGAHNDKSGAAWTGGGFL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1445 486 MobiDBLite consensus disorder prediction 355 387 - -
Gso3g1445 486 CDD ArfGap_ArfGap1 3 117 - -
Gso3g1445 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 406 486 IPR044519 GO:0005096|GO:0016192
Gso3g1445 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 408 IPR044519 GO:0005096|GO:0016192
Gso3g1445 486 MobiDBLite consensus disorder prediction 423 438 - -
Gso3g1445 486 MobiDBLite consensus disorder prediction 401 422 - -
Gso3g1445 486 MobiDBLite consensus disorder prediction 117 196 - -
Gso3g1445 486 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Gso3g1445 486 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Gso3g1445 486 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Gso3g1445 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 406 486 - -
Gso3g1445 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 408 - -
Gso3g1445 486 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Gso3g1445 486 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Gso3g1445 486 MobiDBLite consensus disorder prediction 138 152 - -
Gso3g1445 486 MobiDBLite consensus disorder prediction 355 486 - -
Gso3g1445 486 SUPERFAMILY ArfGap/RecO-like zinc finger 5 112 IPR037278 -
Gso3g1445 486 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Gso3g1445 486 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1445 Gso-Chr3 40469539 40473811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1445 5 83 C2H2 Transcription Factor Family AT4G05330 52.500 1.29e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1445 K12492 - gmx:100801306 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1445 3 40469539 40473811 Gso3g1445 3 40469539 40473811 ECH
Gso19g1435 19 43248667 43252739 Gso3g1445 3 40469539 40473811 GST
Gso3g1445 3 40469539 40473811 Gso10g0380 10 4039119 4043603 PCT
Gso10g0380 10 4039119 4043603 Gso3g1445 3 40469539 40473811 PCT