Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1434 ATGGCCAATAATCACAATCACTGTGTTCCAGATTTCGATATTCAAATGGACCACGACCACGAATACCCTATTCTCACGCCTTCAGCCTTACCTCGCCAAAAGAAACCCTCCATTGCAGACGACGATATCATGGAGCTGCTATGGCACAACGGCCAGGTCGTGGTGCAGAGTCAGAACCAACGTTCTCTGAGAAAACTTCCGCCGGTGACCAACTCCCACGACGCCTCTCCCGCCGGTCCTTCAATGGCGAGAGAGATTCGACCGCTGGTGGAGAATTTCAATCAGCATCTCTTCATGCACGAAGGCGAAATGGCTTCGTGGCTTCACTATCCTATCGACGACGACGAGCCTGCGTTGGATCAAAGCTTCGGCGCCGATTTTCTCTATTCTCCGCCGACGACGGCTAACAACAGCAGCTTCATGCAAACCCTCGGCCACACGTCTCAGCTCACGGAGCTCCGGCCGATGTCGGCGAATCCACGGCCTCCGATTCCGCCCCCGAGAAGGCCGGAACAGAGGACGCCGAACTTCGCGTACTTCTCGAGGCACAACACGAGAGCCGCGGAGCCGAGCGTGAAGGCCGCCGCGAGGGAATCCACGGTGGTGGATTCGTGCGATACGGAGGCGGCGGCTTCGAGAGTTTCGGAGACAGTAAGGAGCGCGGCGGAAGGAGGTGCCGGCGTTGCGGCGCCTTCGACGAGTGCCGGCGGTGGAAGGAGCACGATGATGTACGATTTGACGATGACGTCATCGCCTGGCGGTTCGAGTAGCTGCGACGAGCCGGTTCAGGTAGCGGCGGCGGAGGAGGATCGGAAGCGGAAGGGACGGGAGGCGGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCAGAAGCAAAGAAGCAAGTTTGTGGATCAACATCTACAAAGAGATCCCGTGCTGCCGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGCGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGTTGCAATAAGTCGGACAAAGCTTCAATGCTGGATGAAGCAATTTCGTACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGAATGGTACCTATGATGTTTCCTGGAATCCAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCTGTAATGCCGTTTCCCAATATGTTACCTGGTTCGGCTTTGCCAGCGGCAACTGCAGCTGCTGCTCATTTGGGACCAAGGTTTTCCATGCCTCCTTTCCACATGCCCCATGTTCCTGCTCCTGATTCATCTAGAATGCAAGCAGCAAATCAGTCAGATAATAATATGGTCACGTCAGCTGGTCCACCTGATCCAAATCAGTCACGTATCCCAAACTTCACTGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTCCAATTAATTCAGGAGAATAAATGA 1491 0.5325 MANNHNHCVPDFDIQMDHDHEYPILTPSALPRQKKPSIADDDIMELLWHNGQVVVQSQNQRSLRKLPPVTNSHDASPAGPSMAREIRPLVENFNQHLFMHEGEMASWLHYPIDDDEPALDQSFGADFLYSPPTTANNSSFMQTLGHTSQLTELRPMSANPRPPIPPPRRPEQRTPNFAYFSRHNTRAAEPSVKAAARESTVVDSCDTEAAASRVSETVRSAAEGGAGVAAPSTSAGGGRSTMMYDLTMTSSPGGSSSCDEPVQVAAAEEDRKRKGREAEEWECQSEDVDFESEAKKQVCGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAHLGPRFSMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQFQLIQENK* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1434 496 SMART finulus 314 363 IPR011598 GO:0046983
Gso3g1434 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Gso3g1434 496 CDD bHLH_AtPIF_like 308 371 - -
Gso3g1434 496 MobiDBLite consensus disorder prediction 153 175 - -
Gso3g1434 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 374 IPR036638 GO:0046983
Gso3g1434 496 MobiDBLite consensus disorder prediction 221 241 - -
Gso3g1434 496 MobiDBLite consensus disorder prediction 267 281 - -
Gso3g1434 496 Coils Coil 314 334 - -
Gso3g1434 496 Coils Coil 264 284 - -
Gso3g1434 496 MobiDBLite consensus disorder prediction 445 479 - -
Gso3g1434 496 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 6 494 IPR031066 -
Gso3g1434 496 MobiDBLite consensus disorder prediction 60 77 - -
Gso3g1434 496 MobiDBLite consensus disorder prediction 433 479 - -
Gso3g1434 496 MobiDBLite consensus disorder prediction 158 172 - -
Gso3g1434 496 Gene3D - 303 366 IPR036638 GO:0046983
Gso3g1434 496 MobiDBLite consensus disorder prediction 267 287 - -
Gso3g1434 496 Pfam Helix-loop-helix DNA-binding domain 312 358 IPR011598 GO:0046983
Gso3g1434 496 MobiDBLite consensus disorder prediction 60 80 - -
Gso3g1434 496 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 6 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1434 Gso-Chr3 40372310 40378419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1434 7 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 44.709 6.97e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g1434 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1434 - - gmx:100797225 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1434 3 40372310 40378419 Gso10g0370 10 3944315 3956141 PCT
Gso10g0370 10 3944315 3956141 Gso3g1434 3 40372310 40378419 PCT