Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1423 ATGACCGCCGGCGGCTGCTCTGCCGGAATTTCGCCACCTGCCGGTCACTCCTTCAAGCCTCTTCTCTCTCCTGACGATGCTCTTCGCCGGTGTCGCGTGCGGCGAGAGAGAATGCCGGTGTCGGTCGTCTTCCTCCTTGCTCTTCTCAACTTGCTTTTCTCCTGCCAAGGTTCTTTGCATGCAGTGAAGTCGATTTCTTTGAGTGTGTCATTTGCTTCATCAGAACGACCTAAAATGTGGTTTGTTAAACCTTCTTCTGGACCATCTTCTGCACCTGTGCCATCTCCATCTTATCATGGTCCTCATGTAACTCCAAGACCAAGACATCATTATCATCACCGTCACCATCACAGCACGAGACCTTATGTAGCAGCTCCACCACCTTCAAAAGATCAAGCTTGTGACCAAATCTGTACTGATCCGCTCACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAATCAGACTTACACTGGATATAGCTCCTTATGCTGTGTTTCCGGTAATGACTGAGTTAGAGAATGAAATTGCGTTGGGCACTTATTTAGAGCAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGACAGTCAGAATCAGGGAAGAACTATTGTTGATATTAACTTGGTTCCGCTGGGAGAGAAATTTGACAATACAACTGCATCTCTTACATATGAGAGGTTTTGGCACAAGAAAGTCCCTCTAAATAGGAGCCTTTTTGGCGATTATGCTGTTGTGTACATTACTTATCCAGGTAGTTGTGTTTCTGAGTTTCTCCTTGTAACATTTTACTTTAACAGTATCGTTATTCATTACTATTTGAGACTAAAGCTGTTTGTATCAGGAATGCCATCATCGCCACCATATGGATCTTTAACTGGGAGCGGTCCTAGTCAAAGTGTTGATGGTATTCTGCCAGTCAGTGCCAACTTTGTCAGCAAGAACCAGAAAATGAATCTCAGGACCATAATCATCATTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTGGTGGGAGCATTTTCGATTATTTTGAAATGGAGGAAGACTAGGAGACCATCAAGTGCTGTTGGCCCTGCGTTCACATCATCTCTAAACAAGAGATCAGGCTTGGGGTCTATGTTGTCAAGTAGTATTACAAGCTCAACATCAATGTCACTTATGTCCACAATGGCTACTTCCCTGCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAGTTCAAAGAGAGTACTAGGTGAAGGAGGATTTGGACGTGTTTATAGTGGGACATTGGAAGATGGGGCTGAAGTTGCAGTTAAGCTGCTAACAAGAGATAATCATCAGAATGGAGACCGTGAATTTATTGCAGAGGTTGAAATGCTAAGCCGTTTGCATCACCGTAACCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGGTGATGACAAGATAAAGGGAATGCTAGATTGGGAAGCAAGGATGAAAATTGCACTAGGAGCTGCAAGAGGATTGGCCTATCTTCACGAGGATTCCAATCCCCGAGTTATTCACAGAGACTTTAAAGCTAGCAATGTGTTACTAGAAGATGACTTTACTCCCAAAGTTTCTGATTTTGGCTTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGGGTGATGGGCACTTTTGGGTATGTTGCCCCAGAATATGCGATGACAGGCCATTTACTTGTCAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCAATGTTGACGAGTAGAGAAGGTGTAGAACAGTTGGTGGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCTGCTATCGCTTCAATGTGCGTTCACCCGGAGGTTACACAGAGACCATTTATGGGTGAAGTTGTGCAGGCTCTCAAGTTAATATACAATGATACAGATGAAACTTGTGGAGATTATTGTAGTCAGAAGGATTCCTCTGCTCAGGAGTCTGATTTTAGAGGTGACCTTGCCCCTTCAGATAGCAGTTGGTGGAATGCGGGAGGGCTAACCCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATCACTATGGAATACAGTTCTGGTCCACTTGAAGAAATGGAGAACAGACCGTTTTCAACTTCAAGCTTGATTGGCGATGAAATATCTTTACCGGTTAAGCATGGGAATAGATCAGGTCCCTTAAGAACAGTCCGAAACAAGCTGTCCTTGCATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCCAAGCGTAATTGGAATGATGGCAACTGGGTTTAA 2466 0.4416 MTAGGCSAGISPPAGHSFKPLLSPDDALRRCRVRRERMPVSVVFLLALLNLLFSCQGSLHAVKSISLSVSFASSERPKMWFVKPSSGPSSAPVPSPSYHGPHVTPRPRHHYHHRHHHSTRPYVAAPPPSKDQACDQICTDPLTSTPFGSPCGCVFPMKIRLTLDIAPYAVFPVMTELENEIALGTYLEQSQVKIMGATADSQNQGRTIVDINLVPLGEKFDNTTASLTYERFWHKKVPLNRSLFGDYAVVYITYPGSCVSEFLLVTFYFNSIVIHYYLRLKLFVSGMPSSPPYGSLTGSGPSQSVDGILPVSANFVSKNQKMNLRTIIIIALSSFVLLLVLVGAFSIILKWRKTRRPSSAVGPAFTSSLNKRSGLGSMLSSSITSSTSMSLMSTMATSLLSVKTFSLSELEKATDKFSSKRVLGEGGFGRVYSGTLEDGAEVAVKLLTRDNHQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPMLTSREGVEQLVDPSLAGSYNFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCGDYCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPVKHGNRSGPLRTVRNKLSLHRFTGSRSEHGGPSSKRNWNDGNWV* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1423 821 MobiDBLite consensus disorder prediction 804 821 - -
Gso3g1423 821 ProSitePatterns Protein kinases ATP-binding region signature. 423 445 IPR017441 GO:0005524
Gso3g1423 821 MobiDBLite consensus disorder prediction 84 126 - -
Gso3g1423 821 MobiDBLite consensus disorder prediction 103 120 - -
Gso3g1423 821 Pfam Protein tyrosine and serine/threonine kinase 419 690 IPR001245 GO:0004672|GO:0006468
Gso3g1423 821 Gene3D Transferase(Phosphotransferase) domain 1 494 715 - -
Gso3g1423 821 Gene3D Phosphorylase Kinase; domain 1 388 493 - -
Gso3g1423 821 MobiDBLite consensus disorder prediction 799 821 - -
Gso3g1423 821 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 280 818 - -
Gso3g1423 821 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 42 257 - -
Gso3g1423 821 ProSiteProfiles Protein kinase domain profile. 417 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1423 821 CDD STKc_IRAK 423 693 - -
Gso3g1423 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Gso3g1423 821 PANTHER OS01G0750732 PROTEIN 280 818 - -
Gso3g1423 821 PANTHER OS01G0750732 PROTEIN 42 257 - -
Gso3g1423 821 SUPERFAMILY Protein kinase-like (PK-like) 395 693 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1423 Gso-Chr3 40197440 40203862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1423 137 810 Receptor kinase-like Gene Family AT5G56890 51.433 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gso3g1423 PK_Tyr_Ser-Thr 7.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1423 - - gsj:114406979 1553.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1418 19 43038462 43044912 Gso3g1423 3 40197440 40203862 GST
Gso3g1423 3 40197440 40203862 Gso10g0356 10 3730773 3737921 PCT
Gso10g0356 10 3730773 3737921 Gso3g1423 3 40197440 40203862 PCT