Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1409 ATGAAGAAGAGCAAGATGAAAATGAAAATCCAGATTTTCATATTCTTCTGTTTCATTAGTTGTTTCTCTTATGGTTTTGCGGCTGCTGCCACAAATGATGAAGTTTCAGCTTTGCTTTCTATAAAAGAAGGTCTCGTTGATCCGTTGAATGCCCTTCAGGATTGGAAACTGCATGGCAAAGCACCAGGAACGGATGCAGCTCATTGTAACTGGACCGGCATCAAATGCAACTCAGATGGAGCTGTAGAGATACTTGATCTCTCCCACAAGAATCTCAGTGGCAGAGTATCCAATGATATACAAAGACTCAAGAGTCTTACTTCTCTCAACTTGTGTTGCAATGCCTTTTCAACACCATTGCCAAAATCCATAGCCAATCTCACCACACTCAACAGCCTTGATGTAAGCCAAAATTTCTTCATTGGTAACTTTCCATTAGCCCTTGGAAGAGCATGGAGACTTGTGGCCTTAAATGCATCCAGCAATGAGTTTTCAGGTTCTCTTCCTGAGGACCTTGCAAATGCCTCTTCCTTGGAGGTGCTTGATCTTAGAGGCAGCTTCTTTGTAGGGTCAGTTCCAAAATCATTCAGTAACTTGCATAAGTTGAAGTTCCTTGGTCTATCTGGGAACAATCTCACTGGTAAAATTCCTGGAGAGCTGGGACAACTTTCATCACTGGAGTATATGATCCTTGGATATAATGAATTTGAAGGTGGAATTCCAGAAGAGTTTGGCAACCTCACCAATCTTAAGTATCTTGATTTGGCAGTAGCTAATCTTGGTGGTGAGATTCCAGGTGGATTGGGAGAGCTCAAGTTGTTGAATACAGTTTTCTTATACAACAACAATTTTGAAGGCAGAATTCCACCAGCAATTAGCAACATGACCTCTTTGCAGTTGCTGGATCTTTCAGATAACATGTTGTCAGGGAAAATTCCAGCTGAAATAAGTCAGCTGAAGAATTTGAAACTTCTCAACTTTATGGGAAACAAGCTGTCTGGTCCTGTGCCTCCTGGCTTTGGAGATTTGCCACAACTAGAAGTACTTGAGCTTTGGAACAATTCCTTGTCAGGGCCATTGCCTAGTAACCTTGGCAAGAATTCACATTTGCAATGGTTGGACGTGTCGTCCAATTCACTCTCGGGAGAGATTCCAGAAAGTCTTTGCAGCCAGGGCAATCTCACCAAGCTTATACTATTCAACAATGCATTCACTGGTCCAATTCCATCAAGCCTATCAATGTGTCCTTCGCTTGTTCGTGTTCGAATTCAGAACAATTTTCTTTCTGGGACAGTTCCTGTGGGTCTTGGGAAGCTTGGGAAGCTTCAAAGGTTAGAATTAGCTAACAATAGTCTTTCTGGTGGAATTCCAGATGACATATCCTCTTCCACGTCTCTTTCCTTCATTGATCTCTCAAGAAACAAGCTCCATTCTTCTCTTCCTTCCACTGTCCTTTCTATTCCAAATCTGCAAGCTTTCATGGTCTCCAACAACAACTTGGAAGGTGAAATCCCAGACCAATTCCAGGACTGTCCATCACTTGCAGTTCTTGATCTCTCATCAAATCATCTATCTGGAAGCATTCCAGCAAGCATTGCTTCATGTCAGAAGTTGGTAAATTTGAACCTCCAAAACAACCAATTGACTGGTGAAATCCCAAAAGCATTGGGTAAGATGCCTACATTGGCCATGCTTGATCTTTCCAACAATTCTCTGACAGGCCAAATACCTGAAAGCTTTGGAATTTCTCCGGCTCTGGAAGCACTCAATGTCTCATTCAATAAGCTAGAAGGTCCAGTCCCAGCAAATGGAATACTAAGAACTATAAACCCAAATGATCTTCTAGGTAATACTGGCCTATGTGGTGGTATCCTCCCTCCATGTGACCAAAACTCTCCATACTCTTCAAGGCATGGAAGCTTGCGTGCAAAGCACATTATTACAGCATGGATCGCTGGAATATCTACAATCCTCATCATCGGGATTGCAATTGTGGTAGCAAGATCTTTGTACATAAGGTGGTACACCGACGGGTTTTGTTTCCGAGAAAGATTTTACAAGGGTAGCAAAGGGTGGCCATGGAGATTGGTGGCATTTCAGAGGCTTGGTTTTACAAGTACTGACATTCTAGCTTGCATCAAGGAAACCAATGTGATTGGCATGGGAGCCACAGGGGTTGTCTACAAAGCTGAGATACCACAACCAAACACAACTGTGGCAGTGAAAAAATTGTGGAGAACAGGAACTGATATTGAAGTAGGAAGCAGTGATGACCTTGTTGGAGAGGTGAATGTTTTAGGGAGGCTAAGGCATAGGAACATTGTTAGACTATTAGGATTTATTCACAATGACATTGATGTGATGATAGTTTATGAATTCATGCACAATGGCAACCTGGGAGAAGCCTTGCATGGTAGACAAGCAACAAGATTGCTTGTAGACTGGGTTTCACGGTACAACATAGCTCTAGGAGTTGCACAAGGACTTGCTTATCTCCATCATGATTGTCATCCACCTGTTATCCATCGAGACATCAAGTCGAATAACATATTGCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTCGGTTTAGCCAAGATGATGATCCGGAAGAATGAAACAGTCTCCATGGTTGCTGGATCATATGGCTACATTGCTCCTGAATATGGATATGCCTTGAAGGTGGATGAAAAGATTGATGTTTACAGTTATGGAGTAGTTTTGTTGGAGCTTCTGACAGGAAAGAGGCCATTAGATTCAGACTTTGGAGAGTCAATAGACATAGTAGAGTGGCTTAGAATGAAGATTAGAGACAACAAATCACTAGAAGAAGTATTGGACCCAAGTGTAGGAAACAGCAGGCATGTTGTAGAAGAAATGCTTTTAGTTCTGAGAATAGCAATTCTTTGCACTGCCAAGCTCCCAAAGGAAAGACCAACCATGAGGGATGTCATAATGATGCTTGGAGAGGCAAAGCCTCGGCGAAAGAGCAGTAGCAATAGCAAAGATGCAGCTAACAACAAAGAGACACCTGTTTTTAGCACATCACCAGTTAACAATAATAATAGCCTTGTGTAG 3081 0.4223 MKKSKMKMKIQIFIFFCFISCFSYGFAAAATNDEVSALLSIKEGLVDPLNALQDWKLHGKAPGTDAAHCNWTGIKCNSDGAVEILDLSHKNLSGRVSNDIQRLKSLTSLNLCCNAFSTPLPKSIANLTTLNSLDVSQNFFIGNFPLALGRAWRLVALNASSNEFSGSLPEDLANASSLEVLDLRGSFFVGSVPKSFSNLHKLKFLGLSGNNLTGKIPGELGQLSSLEYMILGYNEFEGGIPEEFGNLTNLKYLDLAVANLGGEIPGGLGELKLLNTVFLYNNNFEGRIPPAISNMTSLQLLDLSDNMLSGKIPAEISQLKNLKLLNFMGNKLSGPVPPGFGDLPQLEVLELWNNSLSGPLPSNLGKNSHLQWLDVSSNSLSGEIPESLCSQGNLTKLILFNNAFTGPIPSSLSMCPSLVRVRIQNNFLSGTVPVGLGKLGKLQRLELANNSLSGGIPDDISSSTSLSFIDLSRNKLHSSLPSTVLSIPNLQAFMVSNNNLEGEIPDQFQDCPSLAVLDLSSNHLSGSIPASIASCQKLVNLNLQNNQLTGEIPKALGKMPTLAMLDLSNNSLTGQIPESFGISPALEALNVSFNKLEGPVPANGILRTINPNDLLGNTGLCGGILPPCDQNSPYSSRHGSLRAKHIITAWIAGISTILIIGIAIVVARSLYIRWYTDGFCFRERFYKGSKGWPWRLVAFQRLGFTSTDILACIKETNVIGMGATGVVYKAEIPQPNTTVAVKKLWRTGTDIEVGSSDDLVGEVNVLGRLRHRNIVRLLGFIHNDIDVMIVYEFMHNGNLGEALHGRQATRLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLDSDFGESIDIVEWLRMKIRDNKSLEEVLDPSVGNSRHVVEEMLLVLRIAILCTAKLPKERPTMRDVIMMLGEAKPRRKSSSNSKDAANNKETPVFSTSPVNNNNSLV* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1409 1026 Gene3D Ribonuclease Inhibitor 283 392 IPR032675 -
Gso3g1409 1026 Gene3D Ribonuclease Inhibitor 393 632 IPR032675 -
Gso3g1409 1026 ProSitePatterns Protein kinases ATP-binding region signature. 719 743 IPR017441 GO:0005524
Gso3g1409 1026 MobiDBLite consensus disorder prediction 990 1026 - -
Gso3g1409 1026 PANTHER UNNAMED PRODUCT 8 1003 - -
Gso3g1409 1026 Pfam Protein kinase domain 715 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1409 1026 Gene3D Transferase(Phosphotransferase) domain 1 798 1016 - -
Gso3g1409 1026 SMART serkin_6 713 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1409 1026 SUPERFAMILY L domain-like 68 358 - -
Gso3g1409 1026 Pfam Leucine rich repeat 488 548 IPR001611 GO:0005515
Gso3g1409 1026 MobiDBLite consensus disorder prediction 1004 1026 - -
Gso3g1409 1026 SUPERFAMILY RNI-like 287 598 - -
Gso3g1409 1026 Gene3D Ribonuclease Inhibitor 185 282 IPR032675 -
Gso3g1409 1026 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
Gso3g1409 1026 PRINTS Leucine-rich repeat signature 514 527 - -
Gso3g1409 1026 PRINTS Leucine-rich repeat signature 559 572 - -
Gso3g1409 1026 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 8 1003 - -
Gso3g1409 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Gso3g1409 1026 ProSiteProfiles Protein kinase domain profile. 713 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1409 1026 Gene3D Phosphorylase Kinase; domain 1 713 797 - -
Gso3g1409 1026 SUPERFAMILY Protein kinase-like (PK-like) 709 989 IPR011009 -
Gso3g1409 1026 Pfam Leucine rich repeat N-terminal domain 32 77 IPR013210 -
Gso3g1409 1026 SMART LRR_typ_2 559 583 IPR003591 -
Gso3g1409 1026 SMART LRR_typ_2 247 271 IPR003591 -
Gso3g1409 1026 SMART LRR_typ_2 295 319 IPR003591 -
Gso3g1409 1026 SMART LRR_typ_2 511 535 IPR003591 -
Gso3g1409 1026 SMART LRR_typ_2 368 391 IPR003591 -
Gso3g1409 1026 SMART LRR_typ_2 439 463 IPR003591 -
Gso3g1409 1026 SMART LRR_typ_2 103 127 IPR003591 -
Gso3g1409 1026 SMART LRR_typ_2 343 367 IPR003591 -
Gso3g1409 1026 SMART LRR_typ_2 487 510 IPR003591 -
Gso3g1409 1026 SMART LRR_typ_2 199 223 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1409 Gso-Chr3 40034635 40038407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1409 11 1019 Receptor kinase-like Gene Family AT1G08590 59.104 0.0 1164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso3g1409 Pkinase 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1409 - - gmx:100789665 1937.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1403 19 42848379 42852290 Gso3g1409 3 40034635 40038407 GST