Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1403 ATGGCGCCCAATCCAAGAGTGGTGGCGGCCTTTACGGCAATGGCGAATCTCGGGATTCATGAATCAAAAGTGAAACCAGTGTTGAAGAAACTGCTTAAATTGTATGATAAGAACTGGGCACTCATTGAAGAAGAGAGTTATAGGGCCCTGGCTGATGCAATATTTGAGGAGGAAGAGAATAAGGTGAATGAGCCAGACCAGAATAATAAAAACAAGAACGGAGTTGTGGACGATGAAGAAGCTCATACGCATGGGGAGCCTGTGCGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATCTTTGCGCCCTCTGACTAGCAGTGGCCCCAGCTCAGCTGCATTTCCGTTGAAAGCGCCTAAATTAGAAGATGGGGCAGTGCCCGAGAGTAGTTCCAGACGGCAGCCTCAAAGCATGGCTGCATTATCTGATGGAAATGCAAGGATTGGTGCTCGTCATGTTCCCCCACAAGATGCTGTTGTCGACAAGGGAAAGAAACCTATATCACCTCAACTTACTCCCAGAGCGAGAAGGTCCCTTGCAGAGCCAACAGTTGAAGCAGGAGCTGCTCTGTTGGCAAATAACAAAATGCCTCATCCATTTATTTTGATCAAGCCCAAGGATGAGCCTGTTGATGGTATACCAGATTATGAGATTCCCCTTGCAGTGATTCCTCCTGAACCATCAAGTGGAGGAGACTCTCTAATGGGTACAGCTGGAAAGAAAGATTGCCATGACACTGTGGTATCACAGTGCAGAGATGAAGACGTTGAACATGAATATGTTTTTCCTTCCTCAAATGAAGAAGCAACTTCTAATGTAGATGTAGCTTTGTCGTCTATGGGTGAGGAACAATCTGTAAAGATAACACAAACTGATGATGTTTCAAAGGAATCTGAGACCAATGACTCACCTATTGTCAGAGGAAACAAAGATTCGGTCATTGCAAATGGATCAATCAGTGTTGAGTCTTCTGCCATGGCTGAACTTCAAGTTCCTAGTTCTATACCCTGCTCGAGTGATCTGGATAATGCTGTACCAGCTCCCAAGAAGGTTGGAATGAATGGTTTCTTACAAAGTGATAGTGGAAAGGAGCTGGAGCATCCTATAATCCCAAATTCACGTACTTTAGTGGTTGTTCCAAAACATCAGCTTACTAATGATGATGTAAGGGCAGTTCATGATGTTAATGACCTAACAAAGGGAGAAGAAAGAGTGAAAATTTCATGGGTGAATAACACTACTAATGATTTCCCACCACCCTGTCACTACATACCCCGAAACCTTGTGTTCCGAGAGGCTTATGTTAATATTTCTCTATCTCGTATTGGGAATGAGGATTGTTGTTCAACTTGTATGGGCAATTGTGTATTGTCATCTAAATCATGTTCTTGTACAAATAAAACTGGGGGTGAATTTGCTTACACTGCAAAAGGCCTACTAAAGGAAGAGTTCTTGGATGAGTGTATTGCCCTCAACCGTGATCCTCAAAATTATTTCTATTGCAAAGCCTGTCCTCTTGAAAGATCAAAGAATGATGATTGTTTAGAACCATGTAAAGGACATTTAAAGAGAAAGTTTATTAAAGAGTGCTGGAGCAAATGCGGCTGTGGGAAACATTGTGGTAATCGGGTTGTCCAGCGTGGAATAACTTGCAAGTTGCAGGTGTTTTTGACTTCAGACAGAAAAGGGTGGGGTCTTCGTACCTTAGAAGATCTTCAAAAAGGCGCATTTGTATGTGAGTTTGTTGGGGAAATTTTAACCATCAAGGAGTTGCATGAGAGGCGCTTGAAATATCCCAAAAATGGGAAATATACATACCCAATTTTATTGGATGCAGATTGGGGTTCAGGAATTGTGAAGGATAGAGAAGCTCTTTGCTTATATGCGGCATCGTATGGAAATGCTGCTAGATTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCAACTCATCACTACTATCATTTTGCCTTCTTCACATCCAGAAAAATAGCAGCACAGGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGACCATGATGATCATCCTGTTGAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGTAGGAATATTAAGCGATCAAATAGATCCATGAGATCGTCAAGTTCATGA 2178 0.4265 MAPNPRVVAAFTAMANLGIHESKVKPVLKKLLKLYDKNWALIEEESYRALADAIFEEEENKVNEPDQNNKNKNGVVDDEEAHTHGEPVRPLKRLRLRGQEGQSLRPLTSSGPSSAAFPLKAPKLEDGAVPESSSRRQPQSMAALSDGNARIGARHVPPQDAVVDKGKKPISPQLTPRARRSLAEPTVEAGAALLANNKMPHPFILIKPKDEPVDGIPDYEIPLAVIPPEPSSGGDSLMGTAGKKDCHDTVVSQCRDEDVEHEYVFPSSNEEATSNVDVALSSMGEEQSVKITQTDDVSKESETNDSPIVRGNKDSVIANGSISVESSAMAELQVPSSIPCSSDLDNAVPAPKKVGMNGFLQSDSGKELEHPIIPNSRTLVVVPKHQLTNDDVRAVHDVNDLTKGEERVKISWVNNTTNDFPPPCHYIPRNLVFREAYVNISLSRIGNEDCCSTCMGNCVLSSKSCSCTNKTGGEFAYTAKGLLKEEFLDECIALNRDPQNYFYCKACPLERSKNDDCLEPCKGHLKRKFIKECWSKCGCGKHCGNRVVQRGITCKLQVFLTSDRKGWGLRTLEDLQKGAFVCEFVGEILTIKELHERRLKYPKNGKYTYPILLDADWGSGIVKDREALCLYAASYGNAARFINHRCLDANLIEIPVEVEGPTHHYYHFAFFTSRKIAAQEELTWDYGINFDDHDDHPVELFQCRCGSKFCRNIKRSNRSMRSSSS* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1403 725 MobiDBLite consensus disorder prediction 58 95 - -
Gso3g1403 725 Pfam SET domain 566 687 IPR001214 GO:0005515
Gso3g1403 725 SMART set_7 554 693 IPR001214 GO:0005515
Gso3g1403 725 SMART preset_2 398 538 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso3g1403 725 Gene3D SET domain 387 714 IPR046341 -
Gso3g1403 725 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 725 - -
Gso3g1403 725 MobiDBLite consensus disorder prediction 100 119 - -
Gso3g1403 725 ProSiteProfiles SET domain profile. 554 687 IPR001214 GO:0005515
Gso3g1403 725 MobiDBLite consensus disorder prediction 292 307 - -
Gso3g1403 725 Pfam Pre-SET motif 402 546 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso3g1403 725 ProSiteProfiles Pre-SET domain profile. 450 551 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso3g1403 725 Gene3D - 1 60 IPR043017 -
Gso3g1403 725 MobiDBLite consensus disorder prediction 125 182 - -
Gso3g1403 725 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 725 IPR025776 -
Gso3g1403 725 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Gso3g1403 725 MobiDBLite consensus disorder prediction 288 312 - -
Gso3g1403 725 SUPERFAMILY SET domain 393 693 IPR046341 -
Gso3g1403 725 CDD SET_SETDB-like 422 687 - -
Gso3g1403 725 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1403 Gso-Chr3 39974321 39981955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1403 400 711 Su(var)3-9 homologs AT1G73100 30.488 5.93e-30 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso3g1403 Pre-SET 3.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1403 - - gmx:100788602 1455.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1396 19 42790518 42799390 Gso3g1403 3 39974321 39981955 GST
Gso10g0343 10 3642874 3650219 Gso3g1403 3 39974321 39981955 PCT