Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1400 ATGGAAGCACATTCTGCTTTCTCTATTGAAAGGTCAAATGCTAATGACATGGGGATGTCTGAAGTATTTCCTTCATCGTTGCCTGTCCTTCCATCGCCTCTAGAAGAGACATTCCCCAAATTATCTGATTCTCGACCAGCTTTTATGGAAAAAGAACTTAAAACAAAACCTTTTACACATTCAAGTCATTTAACTTCCAGCGGAGCAGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTTATGAAAAACAACCTAGAAATACTCATTTTATTTCACAACCATTGGGTAACATGGCTTCATTGCCATTATCTTATTCTTCAAATAGTGAACCAATACCTTCTACAACGTCAACCCCTTATTCCAATGGAAACAGTGTTTCCTGGCATACAGATTCTCTGCCTAGCTTTCTTGATTTCACAGCCAATACCTCCGTTGATAATAGTCAAGTAGAAAACCGTGCCTGCAATATCATGGCAACTGAAGAGTATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAATTAATCAGTGATGTTGATCCTTTGACTTCTAACTGGAATGATCTTCTTGCTGACAACATTCAAGATCTGGAACCAAAGGTCACAAAATCATCTTCACAACTTCCAATAGAACACCAATCTCAAAGCCATCAACAACTTTGTGCTTCATCTGGAGAAAATCGTGTTGGTGTTGCCCCAACTTCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATACCATGTTAAAAGCCACCTACAGAAATACAGGACAGCTAGATATAGACCTGAGTCATCTGAAGGAGCTGCAGAGAAAAATCTAAGTCGAATCGAAGAGATGTCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGCAAACCTGGCATTGAAACATTTAAGGCATCATCATCTGTCATCGAGAGTCAATCTGGAGTGTCTTCTGATGCCATCAAAGATTCTCCAGCCAAAACTGAATCAGAAACCATCAAGGTGGACCACTGCAAGTCAGGAGCTGATCTGGCTAATGGCAGTACCACAGTTGAGGAAAGCTCATTGGAAGTGGCTGAGAAGCAGGATGCTCCTGAAATTCAAGCTTCCGACAATCCTGAGCAACATGCTAGTGAAGATAGTGGTAATGCCTCAAAGCGTCCAAGGACAGAGGAGTAA 1446 0.4219 MEAHSAFSIERSNANDMGMSEVFPSSLPVLPSPLEETFPKLSDSRPAFMEKELKTKPFTHSSHLTSSGAVGHMFSSSPGYSTDLHHSSFSSYEKQPRNTHFISQPLGNMASLPLSYSSNSEPIPSTTSTPYSNGNSVSWHTDSLPSFLDFTANTSVDNSQVENRACNIMATEEYSKRNDWQEWADQLISDVDPLTSNWNDLLADNIQDLEPKVTKSSSQLPIEHQSQSHQQLCASSGENRVGVAPTSSANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKNLSRIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGIETFKASSSVIESQSGVSSDAIKDSPAKTESETIKVDHCKSGADLANGSTTVEESSLEVAEKQDAPEIQASDNPEQHASEDSGNASKRPRTEE* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1400 481 Coils Coil 343 363 - -
Gso3g1400 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 252 312 IPR017930 -
Gso3g1400 481 SUPERFAMILY Homeodomain-like 253 309 IPR009057 -
Gso3g1400 481 MobiDBLite consensus disorder prediction 397 481 - -
Gso3g1400 481 MobiDBLite consensus disorder prediction 413 427 - -
Gso3g1400 481 MobiDBLite consensus disorder prediction 397 412 - -
Gso3g1400 481 Pfam Myb-like DNA-binding domain 257 308 IPR001005 -
Gso3g1400 481 Pfam MYB-CC type transfactor, LHEQLE motif 340 386 IPR025756 -
Gso3g1400 481 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 25 481 - -
Gso3g1400 481 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 255 309 IPR006447 GO:0003677
Gso3g1400 481 Gene3D - 254 313 - -
Gso3g1400 481 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 25 481 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1400 Gso-Chr3 39952175 39958630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1400 6 429 G2-like Transcription Factor Family AT4G28610 49.192 8.80e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso3g1400 Myb_DNA-binding 9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1400 - - gmx:100784711 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1393 19 42768804 42776355 Gso3g1400 3 39952175 39958630 GST
Gso3g1400 3 39952175 39958630 Gso10g0340 10 3617827 3624380 PCT
Gso10g0340 10 3617827 3624380 Gso3g1400 3 39952175 39958630 PCT