Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1399 ATGAGAACCAGCTTTGGAGCACAATTACTCACAGGTCAAGTTGTTGCTGTTAAAAGGCTCAACATATCAGACTCTGATGACATTCCAGCAGTGAATCGCCAGAGCTTTCAGAATGAGATAGAATCACTTACTGAAGTGAGGCACCGCAATATAATAAAGCTTTACGGGTTCTGTTCTTGGAGTGGACAAATGTTCTTGGTTTATGAACATGTACAAAGAGGAAGCATGGGGAAAGTGTTGTATGGAGAGGAAACTAAATTGGAGTTAAGTTGGGCCACAAGGCTGAAAATTGTGCAGGGAATAGCACACGCAATTTCATACCTGCAAAGTGACTGCTCCCCAGCAATTGTGCACCGGGATGTAACACTGAATAACATTCTACTAGACTCCGACTTAGAACCTCGTCTTGGCACAGCAAAGCTGCTAAGCTCCAACACTTCAACATGGACCTCAGTTGCTGCTGGTTTGTATGGCTACATGGCTCCAGAACTCATACAAACAATGAGGGTGACTGACAAGTGTGACGTGTATAGTTTTGGAGTAGTGGTGTTGGAGATATTCATGGGAAAGCATCCCGGAGAACTCTTGACTACAATGTCTTCAAACAAGTATTTGACATCAATGGAGGAACCTCAGATGCTACTGAAGGATGTGCTTGACCAACGGCTTCCACCTCCGACTGGCCAATTAGCAGTAGCAGTAGTGTTCACAATGACAATAGATATGGCATGCACATGTGATGGATTCTGTGGCACAACTATCGTCGGCTACTACGCAGGCTTGTCTCTCCGAGCCATTTGGGATGATAACTATAAGCAAGCTTACAGGGTTCCAGAAATAGTGCCATGTAGGACTGCGGGGTCTGTGGCAATGTGGCATAACTTGTAG 888 0.4505 MRTSFGAQLLTGQVVAVKRLNISDSDDIPAVNRQSFQNEIESLTEVRHRNIIKLYGFCSWSGQMFLVYEHVQRGSMGKVLYGEETKLELSWATRLKIVQGIAHAISYLQSDCSPAIVHRDVTLNNILLDSDLEPRLGTAKLLSSNTSTWTSVAAGLYGYMAPELIQTMRVTDKCDVYSFGVVVLEIFMGKHPGELLTTMSSNKYLTSMEEPQMLLKDVLDQRLPPPTGQLAVAVVFTMTIDMACTCDGFCGTTIVGYYAGLSLRAIWDDNYKQAYRVPEIVPCRTAGSVAMWHNL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1399 295 Gene3D Transferase(Phosphotransferase) domain 1 71 246 - -
Gso3g1399 295 PANTHER LEUCINE RICH REPEAT KINASE 2 6 247 - -
Gso3g1399 295 PANTHER TYROSINE KINASE FAMILY PROTEIN 6 247 - -
Gso3g1399 295 ProSiteProfiles Protein kinase domain profile. 1 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1399 295 Pfam Protein kinase domain 10 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1399 295 ProSitePatterns Tyrosine protein kinases specific active-site signature. 116 128 IPR008266 GO:0004672|GO:0006468
Gso3g1399 295 SUPERFAMILY Protein kinase-like (PK-like) 7 206 IPR011009 -
Gso3g1399 295 Gene3D Phosphorylase Kinase; domain 1 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1399 Gso-Chr3 39947484 39949322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1399 10 162 Receptor kinase-like Gene Family AT4G08850 49.682 1.04e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso3g1399 Pkinase 1.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1399 - - gsj:114405271 595.89