Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1398 ATGGCAAGTTTTCTAAAGGTTCATGCTCTTCTCTTTCATATACTCTTTTTCATATCTCTTCTTCCATTCAAAATTACTTCATCACAAATAACAGAATCAGAAGCCCTTGTCAAATGGAAAAACAGTTTATCCCCTCCTCTTCCTTCTTCTCTAAACTCATCATGGTCCCTCACCAACCTTGGCAACCTTTGCAATTGGGATGCCATTGTTTGTGACAACACTAACACAACAGTCTTAGAGATAAACTTGTCTGATGCCAATCTCACTGGGACTCTCACTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTCACTGCCAACCATTTTGGTGGGTCAATACCATCAGCAATTGGTAACCTCTCCAAGCTCACTTTATTGGACTTTGGTAACAACTTATTTGAAGGAACACTGCCTTATGAACTAGGTCAGCTAAGGGAGCTTCAATATCTTAGCTTTTACGACAACAGTCTCAATGGAACCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGATCAAACTACTTTATAACTCCTCCTGACTGGTTCCAATATTCATGCATGCCTTCCTTAACTCGCCTTGCTTTGCATCAAAATCCCACACTCACCGGTGAATTCCCTAGTTTCATACTTCAGTGCCATAACTTGACATACCTTGACATCTCTCAGAATAACTGGAATGGAACAATTCCAGAATCCATGTATAGCAAATTAGCCAAGCTAGAATACCTCAACCTCACCAATTCTGGGCTACAAGGAAAACTATCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGCATAGGTAATAACATGTTTAATGGTTCTGTTCCTACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAATTGAATAACATTTCTGCCCATGGGAAAATTCCTTCTTCCTTAGGCCAACTCAGGGAGCTATGGAGTCTTGATCTCAGAAATAATTTTTTGAACTCTACAATTCCTTCTGAGCTTGGCCAATGCACAAAACTAACCTTCTTGAGTTTAGCAGGGAATAGTTTGTCTGGTCCTTTGCCTATATCCTTAGCGAATCTGGCTAAAATATCAGAATTGGGGTTATCAGAGAATTCCTTTTCTGGTCAACTTTCTGTTTTGCTCATCTCTAATTGGACCCAATTGATCTCCTTGCAACTCCAAAACAATAAGTTTACAGGAAGGATTCCTTCTCAGATCGGCCTTTTGAAAAAAATTAACTACCTATATATGTACAAGAATCTGTTCTCTGGTCTCATTCCTTTAGAGATTGGAAACCTGAAGGAAATGATAGAGTTGGACCTTTCACAAAACGCATTCTCTGGTCCAATTCCATCTACACTTTGGAATTTGACAAACATTCAAGTCATGAATCTTTTCTTCAATGAGCTCTCTGGAACCATTCCCATGGATATTGGAAACTTAACCTCACTGCAAATCTTTGATGTCAACACTAATAACTTGTATGGGGAGGTTCCAGAATCCATTGTTCAACTACCTGCTTTAAGTTATTTTTCTGTGTTCACCAATAACTTCTCTGGCAGCATTCCAGGAGCATTTGGAATGAATAATCCTTTGACTTATGTTTACCTTTCAAACAACAGCTTCTCTGGAGTACTACCTCCTGACTTGTGCGGTCATGGCAACCTAACTTTTTTGGCAGCCAATAACAACAGCTTTTCCGGGCCACTGCCAAAGTCCTTGAGAAACTGTTCATCACTAATTAGAGTCCGGCTTGATGATAACCAGTTCACTGGAAACATAACAGATGCATTTGGGGTGCTCCCAAATCTTGTTTTTGTCTCACTTGGTGGAAATCAGCTTGTTGGTGACCTCTCCCCGGAGTGGGGTGAATGTGTCAGTTTAACTGAGATGGAAATGGGAAGCAACAAACTTTCTGGAAAAATTCCATCTGAGCTAAGTAAGTTGAGTCAATTAAGGCATCTAAGCCTGCATTCCAATGAATTCACTGGCCATATCCCACCTGAAATTGGAAATCTAAGCCAACTTTTATTGTTCAACATGAGCAGTAACCATTTATCAGGAGAAATCCCCAAAAGTTATGGCAGATTGGCTCAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAGAGAGCTCGGTGATTGCAATCGCTTACTGAGACTGAATTTAAGCCATAACAATCTATCCGGGGAGATACCATTTGAACTTGGCAATCTGTTCTCACTCCAAATCATGTTAGACCTCAGCAGCAACTATCTTTCTGGAGCGATTCCCCCAAGCCTTGAAAAGTTAGCATCATTGGAGGTTCTCAATGTCTCACACAACCATCTTACAGGGACAATCCCACAATCACTTTCAGACATGATCAGCCTTCAATCTATTGATTTTTCTTACAACAACTTGAGTGGTTCAATCCCCACAGGTCGTGTTTTCCAGACCGTGACTTCTGAAGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACTTGTCCCAAAGTATTTTCCTCACACAAATCTGGAGGGGTTAATAAAAATGTTCTTCTTAGTATTCTCATACCAGTTTGTGTCTTACTTATTGGGATTATTGGTGTTGGAATCCTACTTTGCTGGCGGCACACCAAAAATAACCCTGATGAAGAGTCCAAAATCACTGAAAAAAGTGATCTATCTATTAGCATGGTTTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAAGCCACCGATGACTTCAATGACAAGTACTGCATTGGAAAGGGAGGATTTGGAAGTGTTTATAGAGCGCAATTACTCACAGGTCAAGTTGTTGCAGTTAAAAGGCTCAACATATCAGACTCTGATGACATTCCAGCAGTGAATCGCCAGAGCTTTCAGAATGAGATAGAATCACTTACTGAAGTGAGGCACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTATGAACATGTACACAGAGGAAGTTTGGGGAAAGTATTGTATGGAGAGGAAGAAAAATCGGAGCTAAGTGGGGCTACAAGGCTGAAAATTGTGAAGGGAATAGCACATGCAATTTCATACCTGCACTCTGACTGCTCCCCACCAATTGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTCCGACTTAGAACCTCGTCTTGCAGATTTTGGCACTGCAAAGCTGTTAAGCTCAAACACTTCAACATGGACTTCAGTTGCTGGATCCTACGGCTACATGGCTCCAGAACTAGCTCAAACAATGAGGGTCACTAACAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTTTTGGAGATAATGATGGGAAAGCATCCTGGAGAACTCTTGTTTACAATGTCTTCAAACAAGTCTTTGTCATCAACAGAGGAACCACCTGTGCTACTGAAGGATGTGCTTGACCAAAGGCTTCCACCTCCAACGGGCAATTTAGCAGAAGCAGTAGTGTTCACGGTGACCATGGCTATGGCATGCACACGTGCGGCTCCAGAGTCCAGACCCATGATGCGTTCTGTGGCACAACAACTGTCATTGGCTACTAAGCAGCCTTGTCTTACAGAGCCATTTGGCATGATAACCATAAGCAAGCTTACAGCAGGGTTCCACTAA 3693 0.4143 MASFLKVHALLFHILFFISLLPFKITSSQITESEALVKWKNSLSPPLPSSLNSSWSLTNLGNLCNWDAIVCDNTNTTVLEINLSDANLTGTLTALDFASLPNLTQLNLTANHFGGSIPSAIGNLSKLTLLDFGNNLFEGTLPYELGQLRELQYLSFYDNSLNGTIPYQLMNLPKVWYMDLGSNYFITPPDWFQYSCMPSLTRLALHQNPTLTGEFPSFILQCHNLTYLDISQNNWNGTIPESMYSKLAKLEYLNLTNSGLQGKLSPNLSMLSNLKELRIGNNMFNGSVPTEIGLISGLQILELNNISAHGKIPSSLGQLRELWSLDLRNNFLNSTIPSELGQCTKLTFLSLAGNSLSGPLPISLANLAKISELGLSENSFSGQLSVLLISNWTQLISLQLQNNKFTGRIPSQIGLLKKINYLYMYKNLFSGLIPLEIGNLKEMIELDLSQNAFSGPIPSTLWNLTNIQVMNLFFNELSGTIPMDIGNLTSLQIFDVNTNNLYGEVPESIVQLPALSYFSVFTNNFSGSIPGAFGMNNPLTYVYLSNNSFSGVLPPDLCGHGNLTFLAANNNSFSGPLPKSLRNCSSLIRVRLDDNQFTGNITDAFGVLPNLVFVSLGGNQLVGDLSPEWGECVSLTEMEMGSNKLSGKIPSELSKLSQLRHLSLHSNEFTGHIPPEIGNLSQLLLFNMSSNHLSGEIPKSYGRLAQLNFLDLSNNNFSGSIPRELGDCNRLLRLNLSHNNLSGEIPFELGNLFSLQIMLDLSSNYLSGAIPPSLEKLASLEVLNVSHNHLTGTIPQSLSDMISLQSIDFSYNNLSGSIPTGRVFQTVTSEAYVGNSGLCGEVKGLTCPKVFSSHKSGGVNKNVLLSILIPVCVLLIGIIGVGILLCWRHTKNNPDEESKITEKSDLSISMVWGRDGKFTFSDLVKATDDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNISDSDDIPAVNRQSFQNEIESLTEVRHRNIIKLYGFCSCRGQMFLVYEHVHRGSLGKVLYGEEEKSELSGATRLKIVKGIAHAISYLHSDCSPPIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTNKCDVYSFGVVVLEIMMGKHPGELLFTMSSNKSLSSTEEPPVLLKDVLDQRLPPPTGNLAEAVVFTVTMAMACTRAAPESRPMMRSVAQQLSLATKQPCLTEPFGMITISKLTAGFH* 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1398 1230 CDD STKc_IRAK 936 1204 - -
Gso3g1398 1230 Gene3D Transferase(Phosphotransferase) domain 1 1011 1214 - -
Gso3g1398 1230 SUPERFAMILY RNI-like 80 406 - -
Gso3g1398 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 195 330 - -
Gso3g1398 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 418 1205 - -
Gso3g1398 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 293 - -
Gso3g1398 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 297 420 - -
Gso3g1398 1230 Gene3D Ribonuclease Inhibitor 191 245 IPR032675 -
Gso3g1398 1230 ProSiteProfiles Protein kinase domain profile. 930 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1398 1230 SMART LRR_typ_2 777 801 IPR003591 -
Gso3g1398 1230 SMART LRR_typ_2 608 632 IPR003591 -
Gso3g1398 1230 SMART LRR_typ_2 488 512 IPR003591 -
Gso3g1398 1230 SMART LRR_typ_2 319 343 IPR003591 -
Gso3g1398 1230 SMART LRR_typ_2 100 124 IPR003591 -
Gso3g1398 1230 SMART LRR_typ_2 656 680 IPR003591 -
Gso3g1398 1230 SMART LRR_typ_2 271 295 IPR003591 -
Gso3g1398 1230 SMART LRR_typ_2 704 728 IPR003591 -
Gso3g1398 1230 SMART LRR_typ_2 440 464 IPR003591 -
Gso3g1398 1230 Pfam Leucine rich repeat 759 814 IPR001611 GO:0005515
Gso3g1398 1230 Pfam Leucine rich repeat 198 258 IPR001611 GO:0005515
Gso3g1398 1230 Gene3D Ribonuclease Inhibitor 29 190 IPR032675 -
Gso3g1398 1230 Pfam Protein kinase domain 932 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1398 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 418 1205 - -
Gso3g1398 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 297 420 - -
Gso3g1398 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 195 330 - -
Gso3g1398 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 293 - -
Gso3g1398 1230 SUPERFAMILY RNI-like 505 820 - -
Gso3g1398 1230 Gene3D Phosphorylase Kinase; domain 1 891 1010 - -
Gso3g1398 1230 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1056 1068 IPR008266 GO:0004672|GO:0006468
Gso3g1398 1230 SUPERFAMILY Protein kinase-like (PK-like) 908 1204 IPR011009 -
Gso3g1398 1230 Gene3D Ribonuclease Inhibitor 246 387 IPR032675 -
Gso3g1398 1230 Gene3D Ribonuclease Inhibitor 536 849 IPR032675 -
Gso3g1398 1230 Gene3D Ribonuclease Inhibitor 388 535 IPR032675 -
Gso3g1398 1230 SUPERFAMILY Outer arm dynein light chain 1 388 533 - -
Gso3g1398 1230 ProSitePatterns Protein kinases ATP-binding region signature. 936 958 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1398 Gso-Chr3 39938656 39945347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1398 27 650 Receptor kinase-like Gene Family AT4G08850 32.160 2.29e-80 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso3g1398 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1398 - - gmx:100784185 2383.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1392 19 42759351 42763822 Gso3g1398 3 39938656 39945347 GST