Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1394 ATGCTAGACAAGAATCACATGATGACAAGTTTTCAAAAGGTTCATGCTCTTCTCTTTCATATACTCTTCTTCATACCTTTGCTTCCATTGAAAATCACATCATCACAAAGAACAGAAGCAGAAGCCCTTGTCAAATGGAAAAACAGTCTATCTCCTCCTCTTCCTCCCTCTCTAAACTCATCATGGTCCCTCTCCAACCTTGGAACCCTTTGCAATTGGGATGCCATTGTTTGTGACAACACTAACACAACAGTGTCACAGATAAACTTGTCTGATGCCAATCTCACTGGGACTCTCACTACCTTCGATTTTGCTTCCCTCCCTAACCTTACTCAACTCAACCTCAATGGCAACAATTTTGAGGGGTCAATACCATCAGCAATTGGCAAACTCTCAAAGCTCACTTTATTGGACTTTGGTACCAACTTATTTGAAGGAACACTGCCTTATGAACTAGGCCAGCTAAGGGAGCTTCAATATCTTAGTTTTTACAACAACAATCTCAACGGCACAATTCCCTATCAGCTCATGAATCTCCCTAAGGTATGGCACCTGGACCTTGGATCAAACTACTTTATAACTCCTCCCGACTGGTCCCAATATTCAGGAATGCCTTCCTTAACTCATCTTGCTTTAGATCTCAATGTCTTCACCGGTGGATTCCCTAGTTTCATACTTGAGTGCCATAACTTGACATACCTTGACATCTCTCAGAATAACTGGAATGGCATAATACCAGAATCCATGTATAGCAATTTGGCAAAGCTTGAATATCTCAACCTCACCAACTCTGGCCTAAAAGGAAAACTGTCTCCAAACTTGTCCAAGCTTTCTAATCTCAAAGAACTTCGCATAGGTAATAACATGTTTAATGGTTCTGTTCCCACTGAAATAGGTTTTGTATCTGGGCTTCAAATTCTTGAATTGAATAATATTTCTGCCCATGGGAAAATTCCTTCTTCCTTAGGCCAACTCAGGGAGCTATGGCGTCTTGATCTCAGTATAAATTTTTTTAACTCTACAATCCCTTCTGAGCTTGGCCTATGCACAAATCTAACCTTCTTGAGTTTAGCAGGGAATAATTTGTCTGGTCCTTTGCCTATGTCATTAGCTAATCTGGCTAAAATATCAGAATTGGGATTATCAGATAATTCCTTTTCTGGTCAATTTTCTGCTCCACTGATCACTAATTGGACCCAAATAATCTCCTTACAATTCCAAAACAATAAATTTACAGGAAATATTCCTCCGCAGATTGGCCTGTTGAAAAAAATTAACTACCTCTATCTGTACAATAATCTGTTCTCTGGTTCCATTCCTGTAGAGATTGGAAACCTGAAGGAAATGAAAGAGTTAGACCTTTCACAAAACGGATTCTCTGGTCCAATTCCATCAACACTTTGGAATCTGACAAACATCCAAGTCATGAATCTTTTCTTCAATGAGTTCTCTGGAACCATTCCCATGGATATTGGAAACTTAACCTCACTGCAAATCTTTGATGTCAACACTAATAACTTGTATGGGGAGGTTCCAGAATCCATTGTTCAACTACCTGCTTTAAGTTATTTTTCTGTGTTCACCAATAACTTCTCTGGCAGCATTCCAGGAGCATTTGGAATGAATAATCCTTTGACTTATGTTTACCTTTCAAACAACAGCTTCTCTGGAGAACTGCCTCCTGACTTGTGCAGTGATGGCAAGCTAGTTATTTTGGCAGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCATCACTAACTAGAGTCCGGCTTGATGATAATCAGTTAACTGGAAACATCACAAACGCATTCGGAGTACTACCAGATCTTAATTTTATTTCACTTAGTAGAAATAAGTTGGTTGGTGAGGTCTCCCGGGAGTGGGGTGAATGTGTGAACTTAACTCGTATGGATATGGAAAACAACAAACTTTCTGGAAAAATTCCATCTGAGCTAAGTAAGTTGAATAAATTAAGGTATCTAAGCCTGCACTCAAATGAATTCACTGGCAATATCCCATCTGAAATTGGGAATTTAGGCCTGCTTTTCATGTTCAACTTGAGCAGTAACCATTTATCCGGAGAAATCCCCCAGAGTTATGGCAGATTAGCTCAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAGAGAGCTCGGTGATTGCAATCGCTTACTGAGTCTGAATTTAAGCCATAACAATCTATCCGGGGAGATACCATTTGAACTTGGCAATCTGTTCCCACTCCAAATCATGTTGGACCTCAGCAGCAACTCTCTTTCTGGAGCTATTCCCCAAGGCCTTGAAAAGTTAGCATCGTTGGAGGTTCTCAATGTCTCACACAACCATCTTACAGGGACAATCCCACAATCACTTTCAGACATGATCAGCCTTCAATCTATTGATTTTTCTTACAACAACTTGAGTGGTTCAATCCCCACAGGTCGTGTTTTCCAGACCGCGACTTCCGAAGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACTTGTTCCAAAGTGTTTTCCCCAGACAAATCCGGAGGGATCAACGAAAAGGTTCTTCTTGGTGTTACCATTCCAGTTTGTGTCTTATTTATTGGGATGATTGGTGTTGGAATCCTACTTTGCCGGCGGCCCCCAAAAAAGCATCTTGATGAAGAATCCAAAAGCATTGAAAAAAGTGATCAGCCTATTAGCATGGTGTGGGGAAAAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCGATGACTTCAATGACAAGTACTGCACCGGAAAAGGAGGATTTGGAAGTGTCTATAGAGCACAATTACTCACAGGCCAAGTTGTTGCTGTTAAAAGGCTCAATATATCAGACTCTGATGACATTCCAGCAGTGAACCGCCAGAGCTTTCAGAATGAGATAAAATTGCTTACAAGATTGAGGCACCAGAATATAATAAAGCTTTATGGGTTCTGTTCTAGGAGAGGACAAATGTTCTTCGTTTATGAACATGTAGACAAAGGAGGTTTGGGGGAAGTATTGTATGGAGAGGAAGGAAAATTGGAACTAAGTTGGACTGCAAGGCTTAAAATTGTGCAGGGAATAGCACATGCAATTTCATACCTGCACACTGACTGCTCCCCACCAATTGTTCACAGGGATATAACATTGAATAACATACTACTAGACTCCGACTTTGAACCTCGTCTTGCAGATTTCGGCACGGCAAAGCTGCTAAGCTCCAACACTTCAACATGGACCTCGGTAGCTGGATCCTATGGCTATGTGGCTCCAGAACTAGCACAAACAATGAGGGTGACTGACAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTATTAGAGATATTCATGGGAAAGCATCCCGGAGAACTCTTGACTACAATGTCTTCAAACAAGTATTTGACATCAATGGAGGAACCTCAGATGCTACTGAAGGATGTGCTTGACCAACGGCTTCCACCTCCGACTGGCCAATTAGCAGAAGCAGTAGTGTTGACAGTGACCATAGCTTTGGCATGCACGCGTGCGGCTCCAGAGTCCAGACCCATGATGCGTGCTGTGGCACAAGAACTTTCGGCTACTACGCAGGCTTCTCTTGCAGAGCCATTTGGCACGATTACCATAAGCAAGCTTACTGGGTTTCAGAAATAG 3708 0.4145 MLDKNHMMTSFQKVHALLFHILFFIPLLPLKITSSQRTEAEALVKWKNSLSPPLPPSLNSSWSLSNLGTLCNWDAIVCDNTNTTVSQINLSDANLTGTLTTFDFASLPNLTQLNLNGNNFEGSIPSAIGKLSKLTLLDFGTNLFEGTLPYELGQLRELQYLSFYNNNLNGTIPYQLMNLPKVWHLDLGSNYFITPPDWSQYSGMPSLTHLALDLNVFTGGFPSFILECHNLTYLDISQNNWNGIIPESMYSNLAKLEYLNLTNSGLKGKLSPNLSKLSNLKELRIGNNMFNGSVPTEIGFVSGLQILELNNISAHGKIPSSLGQLRELWRLDLSINFFNSTIPSELGLCTNLTFLSLAGNNLSGPLPMSLANLAKISELGLSDNSFSGQFSAPLITNWTQIISLQFQNNKFTGNIPPQIGLLKKINYLYLYNNLFSGSIPVEIGNLKEMKELDLSQNGFSGPIPSTLWNLTNIQVMNLFFNEFSGTIPMDIGNLTSLQIFDVNTNNLYGEVPESIVQLPALSYFSVFTNNFSGSIPGAFGMNNPLTYVYLSNNSFSGELPPDLCSDGKLVILAVNNNSFSGPLPKSLRNCSSLTRVRLDDNQLTGNITNAFGVLPDLNFISLSRNKLVGEVSREWGECVNLTRMDMENNKLSGKIPSELSKLNKLRYLSLHSNEFTGNIPSEIGNLGLLFMFNLSSNHLSGEIPQSYGRLAQLNFLDLSNNNFSGSIPRELGDCNRLLSLNLSHNNLSGEIPFELGNLFPLQIMLDLSSNSLSGAIPQGLEKLASLEVLNVSHNHLTGTIPQSLSDMISLQSIDFSYNNLSGSIPTGRVFQTATSEAYVGNSGLCGEVKGLTCSKVFSPDKSGGINEKVLLGVTIPVCVLFIGMIGVGILLCRRPPKKHLDEESKSIEKSDQPISMVWGKDGKFTFSDLVKATDDFNDKYCTGKGGFGSVYRAQLLTGQVVAVKRLNISDSDDIPAVNRQSFQNEIKLLTRLRHQNIIKLYGFCSRRGQMFFVYEHVDKGGLGEVLYGEEGKLELSWTARLKIVQGIAHAISYLHTDCSPPIVHRDITLNNILLDSDFEPRLADFGTAKLLSSNTSTWTSVAGSYGYVAPELAQTMRVTDKCDVYSFGVVVLEIFMGKHPGELLTTMSSNKYLTSMEEPQMLLKDVLDQRLPPPTGQLAEAVVLTVTIALACTRAAPESRPMMRAVAQELSATTQASLAEPFGTITISKLTGFQK* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1394 1235 Gene3D Transferase(Phosphotransferase) domain 1 1018 1221 - -
Gso3g1394 1235 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 424 537 - -
Gso3g1394 1235 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 536 1211 - -
Gso3g1394 1235 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 179 352 - -
Gso3g1394 1235 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 298 426 - -
Gso3g1394 1235 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 8 309 - -
Gso3g1394 1235 Pfam Protein kinase domain 942 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1394 1235 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1062 1074 IPR008266 GO:0004672|GO:0006468
Gso3g1394 1235 CDD STKc_IRAK 943 1210 - -
Gso3g1394 1235 SUPERFAMILY L domain-like 330 511 - -
Gso3g1394 1235 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
Gso3g1394 1235 Gene3D Ribonuclease Inhibitor 392 541 IPR032675 -
Gso3g1394 1235 Gene3D Ribonuclease Inhibitor 542 855 IPR032675 -
Gso3g1394 1235 Gene3D Ribonuclease Inhibitor 202 391 IPR032675 -
Gso3g1394 1235 SMART LRR_typ_2 107 131 IPR003591 -
Gso3g1394 1235 SMART LRR_typ_2 662 686 IPR003591 -
Gso3g1394 1235 SMART LRR_typ_2 277 301 IPR003591 -
Gso3g1394 1235 SMART LRR_typ_2 783 807 IPR003591 -
Gso3g1394 1235 SMART LRR_typ_2 325 349 IPR003591 -
Gso3g1394 1235 SMART LRR_typ_2 494 518 IPR003591 -
Gso3g1394 1235 SMART LRR_typ_2 710 734 IPR003591 -
Gso3g1394 1235 SMART LRR_typ_2 155 179 IPR003591 -
Gso3g1394 1235 SMART LRR_typ_2 446 470 IPR003591 -
Gso3g1394 1235 SUPERFAMILY L domain-like 69 395 - -
Gso3g1394 1235 SUPERFAMILY RNI-like 512 825 - -
Gso3g1394 1235 ProSiteProfiles Protein kinase domain profile. 936 1218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1394 1235 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 536 1211 - -
Gso3g1394 1235 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 179 352 - -
Gso3g1394 1235 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 8 309 - -
Gso3g1394 1235 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 424 537 - -
Gso3g1394 1235 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 298 426 - -
Gso3g1394 1235 SUPERFAMILY Protein kinase-like (PK-like) 915 1210 IPR011009 -
Gso3g1394 1235 Gene3D Phosphorylase Kinase; domain 1 898 1016 - -
Gso3g1394 1235 Pfam Leucine rich repeat 765 820 IPR001611 GO:0005515
Gso3g1394 1235 Gene3D Ribonuclease Inhibitor 36 201 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1394 Gso-Chr3 39904593 39908989 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1394 33 656 Receptor kinase-like Gene Family AT4G08850 32.320 3.06e-85 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso3g1394 Pkinase 4.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1394 - - gmx:100786462 2333.14