Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1391 ATGGGGAGTAGGGCTAAGCAGGGGAGGAGATTGCAGAAGATGATGAAGTGCATGTGCCTGAGGGAGCCGTTGAAGAAAGGAGGAGAAGATGAAACGGTTCCTTCCTCGGATTCTCTTGCAATCACGGAGTTTTATTCTTCAACGGCGAGTGGGCGTTCTGGCCTCGACGGAGAAATTGAGAAGATGGGGTCGGGTTCTGGGAACATGGATGAAGCTGAATTGTCCTTGCGTGAGAGTGGCATCATGGATATCATGGACAATGAGGAAGCTAGAGCTTTGTTAGGAAAAGATGAATATCAGGAAGGGAATATAGAAGCAGCTTTACGTATTTATGAGAGGATAAATATAAGCGCTGTGACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACATCATAAGAAACATTCCCATTATTATGCTATGCCTCCGATGTCCATATACACGGTTGGATTACTGTTGGAAGCAATTTTCCTAAAAGCAAAATGTTTGCAGGTTCTGGGGAGGTTTAAAGAATCTGCCCAAACTTGTAAAGTTATTCTGGACATAGTTGAGTCTTCTTTACCTGAAGGCTTGCCTCAAAACTTTGGTCACGAGGGTAAATTGCAGGAGACTTTGGGTAATGTAGTTGAGCTACTTCCAGAATTGTGGAAACTTGCTGATTCTCCCCGTGATGTTATTTTGTCTTACCGTCGTGCACTCCTTCACCAATGGAATCTTGATGCAAAAACCATAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGCAATCCCTTCAAATCTTCGTTCCCATATGGACAGCTCGTTTGTACCCAGAAACAACTTAGAAGAGGCTATACTTCTTTTAATGATTTTGCTGAGAAAAATATCTCTAAATAAAATTGAATGGGATCCGTCAATTTTGGATCACCTTTCGTTTGCTCTATCTGTTTCAGGGGATTTGACAACTTTAGCCCATCAATGGGAAGAATTACTCCCTGGGACTATCAATCGAAGAGAAAGATACCATGCCTTATCTCTTTGTTATTATGGCGCAGGTAATGACTTGGTAGCACTGAATCTTCTTAGGAAATTGTTGAGTAGTAGAGAGGGCCCAAAACATGTTCCTTCTTTGTTAATGGCTTCTAAGATTTGTAGTGAGAACCCTGATCTTGCAAAAGATGGGGCAAGCTTAGCTCGCAAAGTGCTTGAGAACTTGGATGGAAGATGTGATCGGTTGGAAAGTCTTTCCAGTTGCTTACTTGGTGTTTCACTTTCAGCACACTCAAAAATTGATATTTCTAATTCTGAGAGGGTTGAGAAACAATCTGAGGCACTTCATTCTCTGGAAACTGCAAGCAAAGTGACCAAAATGAGTAACCCCCTTGTAATATACTACTTGAGCTTAGAATGTGCAGAGCAAAGGAAGTTGGATGCTGCACTTCATTATGCAAAATGCTTTCTAAACTTAGAAGTTGGGTCTAACATTAAAGGATGGTTATTGTTAGCCCGGATATTATCAGCTCAAAAACAGTTTTTGGACGCTGAATCTATTGTCAATGAAGCTTTGAATCAGACTGGAATATGGGATCAAGGAGAGTTACTGCGAACAAAAGCTAAACTACAAATAGCACAGGGCCAGTTGAAGAGTGCCATTGAAACATATACTCAGCTTCTTGCTATTCTCCTAGTTCAGAGAAAAACTTTTGGTTCAAAGAAGAAGCTGTATAAGGACTACATAGATCATGCTAGGAGCATGGAAGTTGAAATATGGCATGATCTTGCTTTTGTGTACATAAGTCTGTCACGGTGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTACAATGCACGAAGCAAAGGGCCTTTACAAAGAGGCTTTAAAAGCTTTTCGTGATGCTTTGAACATTGATCCTGGACATGTCCCTAGCTTGATCTCTGCTGCGGTTGTTCTTAGATGGTGCAGTAATCGATCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCACTACGGCATGACAGATTTAATGCTTCTGCTTGGTATAATCTTGGTATTTTTCACAAGGATGAGGGTACAATTCTAGAAGCTGCAGAATGTTTTGAGACAGCAAACTCTCTTGAAGAATCCGCTCCGGTTGAACCCTTCAGATGA 2199 0.412 MGSRAKQGRRLQKMMKCMCLREPLKKGGEDETVPSSDSLAITEFYSSTASGRSGLDGEIEKMGSGSGNMDEAELSLRESGIMDIMDNEEARALLGKDEYQEGNIEAALRIYERINISAVTSKMKISLAKSREHHKKHSHYYAMPPMSIYTVGLLLEAIFLKAKCLQVLGRFKESAQTCKVILDIVESSLPEGLPQNFGHEGKLQETLGNVVELLPELWKLADSPRDVILSYRRALLHQWNLDAKTIAKIQKEFVVFLLYSGGEAIPSNLRSHMDSSFVPRNNLEEAILLLMILLRKISLNKIEWDPSILDHLSFALSVSGDLTTLAHQWEELLPGTINRRERYHALSLCYYGAGNDLVALNLLRKLLSSREGPKHVPSLLMASKICSENPDLAKDGASLARKVLENLDGRCDRLESLSSCLLGVSLSAHSKIDISNSERVEKQSEALHSLETASKVTKMSNPLVIYYLSLECAEQRKLDAALHYAKCFLNLEVGSNIKGWLLLARILSAQKQFLDAESIVNEALNQTGIWDQGELLRTKAKLQIAQGQLKSAIETYTQLLAILLVQRKTFGSKKKLYKDYIDHARSMEVEIWHDLAFVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGTMHEAKGLYKEALKAFRDALNIDPGHVPSLISAAVVLRWCSNRSNPAIRSFLMDALRHDRFNASAWYNLGIFHKDEGTILEAAECFETANSLEESAPVEPFR* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1391 732 SUPERFAMILY TPR-like 534 723 IPR011990 GO:0005515
Gso3g1391 732 Pfam Tetratricopeptide repeat 693 724 IPR019734 GO:0005515
Gso3g1391 732 Pfam Tetratricopeptide repeat 624 655 IPR019734 GO:0005515
Gso3g1391 732 ProSiteProfiles TPR repeat profile. 693 726 IPR019734 GO:0005515
Gso3g1391 732 Gene3D Tetratricopeptide repeat domain 62 585 IPR011990 GO:0005515
Gso3g1391 732 SUPERFAMILY TPR-like 441 562 IPR011990 GO:0005515
Gso3g1391 732 Gene3D Tetratricopeptide repeat domain 586 728 IPR011990 GO:0005515
Gso3g1391 732 ProSiteProfiles TPR repeat profile. 623 656 IPR019734 GO:0005515
Gso3g1391 732 PANTHER PROTEIN NPG1 7 732 IPR043376 -
Gso3g1391 732 MobiDBLite consensus disorder prediction 50 70 - -
Gso3g1391 732 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 7 732 - -
Gso3g1391 732 SMART tpr_5 155 188 IPR019734 GO:0005515
Gso3g1391 732 SMART tpr_5 623 656 IPR019734 GO:0005515
Gso3g1391 732 SMART tpr_5 693 726 IPR019734 GO:0005515
Gso3g1391 732 SMART tpr_5 589 622 IPR019734 GO:0005515
Gso3g1391 732 SMART tpr_5 533 566 IPR019734 GO:0005515
Gso3g1391 732 SMART tpr_5 497 530 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1391 Gso-Chr3 39872787 39878342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1391 15 732 Calmodulin-binding Proteins AT4G28600 53.825 0.0 722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1385 19 42686132 42693513 Gso3g1391 3 39872787 39878342 GST
Gso3g1391 3 39872787 39878342 Gso10g0336 10 3584396 3590379 PCT