Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1385 ATGTCTTCTTTGATGATGGATCATGTTATTGGTGGGAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATATACAAACCGGAGAGGAGGTGGCTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCATCTCAAGTGGTTTGGAGTAGAGGGAGACTACAATGTCATGGCAATTGATCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCTAGAGGTTTCCTTCACCGTGACATCAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAACCAGGTGTACATCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCCCGGTATGCAAGTGTCAACACCCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAAATGTCAACTTCGTTAGAGGGGCTCTGCAAGTCATATCCCTCAGAGTTTGTATCATATTTTCAATATTGCCGAACATTGCGATTTGAAGACAAGCCTGATTATTCATATTTAAAGAGGCTGTTTCGAGATTTATTTATTAGAGAAGGCTATCAATTTGACTATGTTTTTGATTGGACTATATTGAAGTATCCGCAGATTGGCGGCAGCAGCTCTAGAGGGCGGCATGAAAGTGGCAAGGCAGCTATGCATGCAGGACCATCTGTACAAAAGCCAGAAAAAGTATCAGTTGGGAAAGAGATTCGAGAAAAATTCTCTGGTGCTGTTGAAGCTTTCTCCCGGAGGAACCCAACAAGTCCTAGTCCTCGTGGTGATCACTCCAAACGTAGGAGTTTTGAGGAAGTAGCAGTACACAAAGATGTGTATCATGATCAAGAGAAGGGACGCAATTCGTCCCGATATGGCAGCAGTTCAAGAAGACCCATAATCTCATTGTCAACCAGGCCAAGTTCCTCTGGTGATCATACTGACAGTCGTACTGGCCGGCTAACCTCAAGTGGAAGCCGACAATCTGCCACACATAGAAATATTCAACCTATGCACGAGACAAAACAACCAACTTACACACGCTCTGGATCCACCAGAGGCAACCGTGATGATCCTCTGCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1407 0.4314 MSSLMMDHVIGGKFKLGRKIGSGSFGELYIAVNIQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTSLEGLCKSYPSEFVSYFQYCRTLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSSRGRHESGKAAMHAGPSVQKPEKVSVGKEIREKFSGAVEAFSRRNPTSPSPRGDHSKRRSFEEVAVHKDVYHDQEKGRNSSRYGSSSRRPIISLSTRPSSSGDHTDSRTGRLTSSGSRQSATHRNIQPMHETKQPTYTRSGSTRGNRDDPLRSFELLSIRK* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1385 468 CDD STKc_CK1_delta_epsilon 13 287 - -
Gso3g1385 468 MobiDBLite consensus disorder prediction 452 468 - -
Gso3g1385 468 ProSiteProfiles Protein kinase domain profile. 14 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1385 468 Gene3D Transferase(Phosphotransferase) domain 1 2 342 - -
Gso3g1385 468 SMART serkin_6 14 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1385 468 MobiDBLite consensus disorder prediction 331 345 - -
Gso3g1385 468 PANTHER CASEIN KINASE I-LIKE PROTEIN 6 457 - -
Gso3g1385 468 SUPERFAMILY Protein kinase-like (PK-like) 9 295 IPR011009 -
Gso3g1385 468 MobiDBLite consensus disorder prediction 306 468 - -
Gso3g1385 468 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Gso3g1385 468 MobiDBLite consensus disorder prediction 357 386 - -
Gso3g1385 468 MobiDBLite consensus disorder prediction 387 451 - -
Gso3g1385 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gso3g1385 468 Pfam Protein kinase domain 15 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1385 468 PANTHER CASEIN KINASE-RELATED 6 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1385 Gso-Chr3 39819958 39825760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1385 7 218 Miscellaneous Gene Families AT1G29230 27.397 1.05e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso3g1385 Pkinase 2.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1385 K08960 - gmx:100781494 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1380 19 42636429 42643079 Gso3g1385 3 39819958 39825760 GST
Gso3g1385 3 39819958 39825760 Gso10g0329 10 3527859 3535975 PCT
Gso10g0329 10 3527859 3535975 Gso3g1385 3 39819958 39825760 PCT