LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1384	ATGGATTCTGCGAGAAGTTGGTTACAAAAATTTCAACCACGTGATAAATTGAGGGCCTCTACAAGGAACAAAGATGATACTAATGGCACAAATGAAATTCCAAATGTGCCTATGGATGATACATCTCTTTCCAATGTCACAAAACAAAAGGTTACGGCAGCCAAACAATACATTGAGAACCACTACAAGGAACAAATGAAAAGCCTTCAAGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGACGCTGATGTCTCCGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAAGAAACTGAATATATGCGTCTTCAAAGGCACAAAATGGGTGTTGACGATTTTGAGTTACTAACTATGATTGGAAAAGGTGCATTTGGGGAGGTTAGAGTCTGTAAGGAAAAGGCTACGGATCATGTATATGCAATGAAAAAGTTAAAGAAATCAGAAATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAAAGGAATCTCCTAGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTTCAAGATGACGAATATTTGTATCTTATTATGGAATATCTACCGGGTGGAGATATGATGACTCTACTCATGAGAAAGGATACCTTGACTGAAGATGAAGCTCGATTTTATGTAGGAGAAACAATTTTAGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGACAACTTGTTACTTGATAAATATGGACATTTGAGACTATCAGACTTTGGACTATGTAAACCATTAGACTGTAGTACACTTAAAGAAACAGATTTCACTACAGGTCAAAATGCGAATGGGTCTACACAAAATAATGAACATGTAGCTCCAAAACGCACACAACAAGAAAAATTGCAACATTGGCAGAAAAATAGAAGGACACTTGCGTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAAAAGGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTAGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGCAGGAAGATAGTAAATTGGAAATCTCACTTAAGATTTCCTGAAGAAGCAAGGTTATCTCCAGAAACTAAAGATCTTATAAGTAAGCTTTTGTGTGATGTTAATCAGAGGTTGGGTTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTCTTCAACGGTGTTGAATGGGATAAATTGTATCAAATGGAAGCTGCCTTTATTCCCGAGGTCAATGATGAGTTAGATACTCAAAATTTTGAAAAGTTTGAAGAGTCTGAGAGTCAAACTCACTCATCATCAAGAGTTAGTCCATGGAGGAAGATGTTTTCTTCTAAAGACTTGAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCAACGACTATCAAGTTCCCGGAATGGCTGAATTGAGGAAGAAAAATTCAAAAGCAAAGAAGCCATCTGTCAAGTCCTTATTTGATGGTGAAAGTGAGGCATTTGAGGCTTCAGAATCAACTACAAGCATAACTAGGAAGTATGATGATCTACCTCCCATGTCAGAATAG	1629	0.3671	MDSARSWLQKFQPRDKLRASTRNKDDTNGTNEIPNVPMDDTSLSNVTKQKVTAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCKEKATDHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETILAIESIHKHNYIHRDIKPDNLLLDKYGHLRLSDFGLCKPLDCSTLKETDFTTGQNANGSTQNNEHVAPKRTQQEKLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLRFPEEARLSPETKDLISKLLCDVNQRLGSNGADEIKAHPFFNGVEWDKLYQMEAAFIPEVNDELDTQNFEKFEESESQTHSSSRVSPWRKMFSSKDLNFVGYTYKNFEIVNDYQVPGMAELRKKNSKAKKPSVKSLFDGESEAFEASESTTSITRKYDDLPPMSE*	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1384	542	ProSiteProfiles	AGC-kinase C-terminal domain profile.	419	491	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Gso3g1384	542	SMART	pkinase_C_6	419	483	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Gso3g1384	542	SMART	serkin_6	120	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso3g1384	542	Gene3D	Phosphorylase Kinase; domain 1	118	447	-	-
	Gso3g1384	542	Pfam	Protein kinase domain	121	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso3g1384	542	Pfam	Protein kinase C terminal domain	437	481	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Gso3g1384	542	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Gso3g1384	542	Gene3D	Transferase(Phosphotransferase) domain 1	204	436	-	-
	Gso3g1384	542	PANTHER	SERINE/THREONINE-PROTEIN KINASE	24	529	-	-
	Gso3g1384	542	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	24	529	-	-
	Gso3g1384	542	MobiDBLite	consensus disorder prediction	9	25	-	-
	Gso3g1384	542	MobiDBLite	consensus disorder prediction	517	542	-	-
	Gso3g1384	542	ProSitePatterns	Protein kinases ATP-binding region signature.	126	149	IPR017441	GO:0005524
	Gso3g1384	542	MobiDBLite	consensus disorder prediction	26	44	-	-
	Gso3g1384	542	ProSiteProfiles	Protein kinase domain profile.	120	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso3g1384	542	SUPERFAMILY	Protein kinase-like (PK-like)	93	473	IPR011009	-
	Gso3g1384	542	CDD	STKc_NDR_like	118	482	-	-
	Gso3g1384	542	MobiDBLite	consensus disorder prediction	1	44	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1384	Gso-Chr3	39809308	39816363	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g1384	1	514	AGC Kinase Gene Family	AT2G20470	78.227	0.0	844

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Gso3g1384		Pkinase	7.8e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1384	K08790		-	gmx:100783286	1091.64

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1379	19	42622092	42629341	Gso3g1384	3	39809308	39816363	GST
	Gso3g1384	3	39809308	39816363	Gso10g0049	10	575594	588886	PCT
	Gso10g0327	10	3504641	3513340	Gso3g1384	3	39809308	39816363	PCT