Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1380 ATGGGTCTGAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTTCTGAAGGGTACCTTGGTCGAAATTGACCTCCACATATGCGAACCTTGGCAACTTCCTGAGGTGGCTAAGCTCAATGCGAATGAGTGGTACTTCTTCAGTTTCCGGGACCGCAAATATGCTACTGGGTTTCGGACCAACCGGGCAACTACATCAGGGTATTGGAAAGCTACGGGGAAGGATCGTAAGGTGGAGGATCCAGCCACGCAAGAGGTTGTAGGGATGAGGAAAACACTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACGGGATGGATCATGCATGAGTTCCGCTTGGAGACCCCACATATGCCTCCAAAGGAGGACTGGGTGTTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATGACAACAGTTCCAAACTCCTACAGTATGAGACGACACCATCATCCCTAACTTTGTTGGCTTCGTCATCTCCCACCAACCAAGCCATGCCTCATGGTGTTGGGTATAATAACCGACTTGCCACCTCTTTCTCTAATTCATTCATGCCAACCCACCAATATCATCATCACTTCAACCCTACCCAAAACGCTAATTCTTTGATGGATCTCCTTCACTTCTCTCGCGAAACCAACACCAACAATACTGGCTTTCTTACTCAAATTGGTGCCAAAGGTGATGACGAATATGGTTTCTTATGGGACATGGATCTAGAAGAAAATAGCCTAGATGATGGCGTGGCTTCAAACTTGGACGCAATAAGATTCGAGGTTGATAATAATAATACTAATAACAACAATATGGTATTGCTATAA 891 0.4557 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRKVEDPATQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDDNSSKLLQYETTPSSLTLLASSSPTNQAMPHGVGYNNRLATSFSNSFMPTHQYHHHFNPTQNANSLMDLLHFSRETNTNNTGFLTQIGAKGDDEYGFLWDMDLEENSLDDGVASNLDAIRFEVDNNNTNNNNMVLL* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1380 296 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Gso3g1380 296 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 286 - -
Gso3g1380 296 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Gso3g1380 296 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Gso3g1380 296 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Gso3g1380 296 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1380 Gso-Chr3 39757747 39765164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1380 6 159 NAC Transcription Factor Family AT1G56010 57.407 1.75e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso3g1380 NAM 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1380 - - gmx:100782751 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1375 19 42562032 42570045 Gso3g1380 3 39757747 39765164 GST
Gso3g1380 3 39757747 39765164 Gso10g0322 10 3445446 3451144 PCT
Gso10g0322 10 3445446 3451144 Gso3g1380 3 39757747 39765164 PCT