Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1379 ATGAAGGAATTCAAATACCCACTTAAATATATTGCAAGCATATGTTCCAGATCAGAACCTTATGGAATTTTCCATATTGTCCCTCCTACTTGCTGGAAACCACCATGCTCTCTTGAGAAAAAGAACATATTGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCAGCATGCACAAGAAACTATGGCTAGTGCTCATGGAAATACAAAAACCAAGAGAAAAAGAGATGTAAAAGTAGCTTTAGACTCTCAGCTTGGTAATAGAAACACCAGCATTCCAAATAACCAGAATGTTGAAAAATGTGACTGTAAGTCTGAACCTGGTCCTAAATTCAGTCTCAAAGCATTTAAGAAATATGATGACATATTTAAGAGCCAGTACTTCAGTTACAAGGATAATAAGAAGATTGTAGGTTCCAATATAAAATTAGCCATACGTCAGCTGTGGGAACCATCTGGGGAGAATATTGAGGGTGAATATGGACGGATTGTTCAAAATCCAACTGAAGAAATCAAGGTGCTTTGTAGTAACACTTTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCGACAGTTTCTGATTCTGTGGAGGCATACACTTACCCTGAAAATTTGAAATCCGGATGGAACTTGAATAATATACTTTCACTGTCAGGTTCCCTTCTTTGTTTTGAAAGCTCTGAAGCTTCACGTAATTTTCCCCCCAATATTCACGTGAGAATTCGCTTCTCTCCACTCAACAGGAAAGTTGAAGAGCACCACTTGTACTCATTATCTTACGTGCATTTGGGTGAACCAAAAGTGTGGTATGACATCCCAGGAAGATTTGCTGCTAACTTTGAAACAATTTGGAAGAAGTATCTCCCAGATTTGCATGCAGGACAGCCTGATATGCATGATAATATGTCTCGCATCCAGAGTGAAAGTTTGAAGAGGAAATTTCTTTACACTTCTTTGGTATCACAAAGAATGGATGAAAATTTTGATGCCACTTGTAAAAGGGAATGTAGTATTTGCATTCGTGATTTACACGTCTGCTGTAGGTTGTTCATGTTCAAACAGCTTTTGTTCTTGCACTTGGAGCAACAAAACTCTCTTCTACCGTTACGAAATCTGTAA 1134 0.3836 MKEFKYPLKYIASICSRSEPYGIFHIVPPTCWKPPCSLEKKNILEKSEFVAQIQRIDGHQVQHAQETMASAHGNTKTKRKRDVKVALDSQLGNRNTSIPNNQNVEKCDCKSEPGPKFSLKAFKKYDDIFKSQYFSYKDNKKIVGSNIKLAIRQLWEPSGENIEGEYGRIVQNPTEEIKVLCSNTLEAGVFSSGFPTVSDSVEAYTYPENLKSGWNLNNILSLSGSLLCFESSEASRNFPPNIHVRIRFSPLNRKVEEHHLYSLSYVHLGEPKVWYDIPGRFAANFETIWKKYLPDLHAGQPDMHDNMSRIQSESLKRKFLYTSLVSQRMDENFDATCKRECSICIRDLHVCCRLFMFKQLLFLHLEQQNSLLPLRNL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1379 377 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 3 307 - -
Gso3g1379 377 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 308 350 - -
Gso3g1379 377 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 307 - -
Gso3g1379 377 PANTHER LYSINE-SPECIFIC DEMETHYLASE 308 350 - -
Gso3g1379 377 Pfam jmjN domain 1 28 IPR003349 -
Gso3g1379 377 Gene3D Cupin 1 329 - -
Gso3g1379 377 ProSiteProfiles JmjN domain profile. 1 35 IPR003349 -
Gso3g1379 377 Pfam JmjC domain, hydroxylase 254 315 IPR003347 -
Gso3g1379 377 SMART JmjN_1 1 34 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1379 Gso-Chr3 39744533 39751155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1379 2 331 JUMONJI Transcription Factor Family AT4G20400 36.873 2.57e-57 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso3g1379 JmjC 5.9e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1379 - - gsj:114406933 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1374 19 42548846 42556807 Gso3g1379 3 39744533 39751155 GST