Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1377 ATGCATATAGCAGGTCAAATAGATACATCTTCAGTGAAATGTCTTGTCAACAGCATTTCGCGATTCATACATCTAGTTTCTTGCCAAGCAGTGAAACCTATGCCCCTTCAAAAGAACTGTAATAATATGGTTTGTGTGTTGAAGCATTTGAAACCAGTGCTCGATGATATTGTGGATTTCAAAATCCCTTTCGATGAAAATCTGCATAGAGAATGTGAAGAATTGGATATGCGGGTTAATGAAGCTAGGGAGTTCATTGAAAAATGGGGCCCGAAGATGAGCAGGATTCACAGTGTTCTTCAAAGTGGGGAATTGTTGATCAAGTTACAGAACTCTTCATATAAGATTTGTCACATGATAGTTAAATCACTAAAGGGACCTGCATCTGTTTTGGTTTCGGGTAATCTTCAGCAATATATGCAGGAACTTCAGTGTCTTAAGAAGGAACCTGCAATGATCTATATAGAAGACGCATTGAGAAATCAAAGGGATAATATCGAACCTTGCTATGATTCTCTAAAGGAAATTATACGGTTACTCATGATATCAAACCAGGAGCTACTGATAGAAAGTATTGCTGTGGAAAAGGAAAGGTCAAATGCTGAAGTCAATAAAACAAAAGGGGACTTGGATGAAATTAACCAAATTGTGAATCTTGTGTGCAGTTTACGTGATTATGTGATGAAATTTGAGCGCCCTGAAGTCAAAAGTGGTGTTTCAATTCCCCCCTATTTTCGATGTCCTTTATCATTAGAACTCATGTCAGATGCTGTTATTGTGGCTTCAGGTCAGACATATGAAAGGCAATCCATTCAAAAGTGGCTTGATCATGGGCTAACTGTTTGTCCCAACACTCGCCAGATACTTGTCCATACAAATCTCATTCCCAATTATACTGTTAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCAGTAACTCTAAGCAAAGTAATTCCTCTCATATTTCATCCCCCTCAGATCATTTATTACATCAAGATTTAGATCGTCTGTGTAGCTTTGAGTCTTCAGCTAGTAGCGATTCCAATTCAAATCAAATTGCAAATGCATTTGAGAAACCAAAGGATGATAACTCTTTCAGATCAAGCAGGGAATCTGATAGAAGCTGGAATGGAGAGACAGAAAAGTTTGAGCAACAATCCCCTGCACCTTCATGTAGTAACAGCAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACTTCCAGTTTTGAAAGAGGTGTCAGGCATATCTAATAAGCATCAAAATGTGGAGTTGTCTAGAGAAATTACTGATGGGTGTCCTGCTTCTCCTGCATATAAAGAATCAGTGATTTATCCTTGGTTATCTGGAAAGCAATTTCATAGCCCTGGATCAAAAATTGGAAGGATGGAGGATGAAAATAAGTATAATGAGAGTAACAATATTAGTATTACCAGTCATTCAAAAGTTGCTTCCCATCCTGTAGGATCCAATGAATTGATCACCACATCCCATGTCAATGAGTTGATTGAAGATCTCCAGAGTCAATCGAATGAAACACAAACTGCTGCTGCAGAACAATTGAGGCTCTGTACCAAGCATAACATGGAGAACCGCATCAGTGTAGGGCGGTGTGGGGCAATTATGCCTTTACTCTCACTGCTATATTCAGAAAGGAAGATAACACAAGAGCATGCCGTGACAGCTCTACTGAATTTGTCAATTAATGAAGGCAACAAGGCCTTGATTATGGAAGCAGGGGCCATAGAACCACTTATCCATGTTTTGAAGACAGGGAATGATGGTGCAAAGGAGAATTCTGCTGCTGCTCTGTTCAGCCTCTCTGTAATAGATAACAATAAGGCAAAAATTGGCCGTTCTGGTGCAGTCAAAGCTTTGGTGGGTCTTCTAGCCTCAGGAACTCTTAGGGGAAAGAAGGATTCTGCCACTGCTTTATTCAACCTATCAATATTCCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCCGTGAAGTTTCTGGTTCTGCTATTGGACCCTACTGATAAAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTGCAGAGGGCCGAATAGAAATTGCAAGGGAAGGGGGCATTCCCTCACTAGTTGAAATTGTTGAATCAGGTTCTCTGAGGGGAAAGGAAAATGCTGCTTCCATCCTCTTGCAACTATGTCTTCATAATCAAAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAGTCTGGTACTCCAAGAGCTAAGGAAAAGGAAAATAGTGTTCAAATCTTGGTGTTCAATCATGGTTACAGAATCAATTTGTTGAAACAATGTGCTAAAAAATCTGGCATTCTAATCTATGTTCTGCAGTGCATTCTTCCCCCAGCCTTGCCCCCAAAAACAGTGAAGAAGCACAACAGCTTCTCAGTCATTTTCGTAATCAGCGTGAAGGAGTCAAGGGGAAGGGGAAATCATGAAGATAAGGCAATTTTGATCATTTCATTGCCCTTTTCACTCTTGCCTCAGTAA 2574 0.399 MHIAGQIDTSSVKCLVNSISRFIHLVSCQAVKPMPLQKNCNNMVCVLKHLKPVLDDIVDFKIPFDENLHRECEELDMRVNEAREFIEKWGPKMSRIHSVLQSGELLIKLQNSSYKICHMIVKSLKGPASVLVSGNLQQYMQELQCLKKEPAMIYIEDALRNQRDNIEPCYDSLKEIIRLLMISNQELLIESIAVEKERSNAEVNKTKGDLDEINQIVNLVCSLRDYVMKFERPEVKSGVSIPPYFRCPLSLELMSDAVIVASGQTYERQSIQKWLDHGLTVCPNTRQILVHTNLIPNYTVKAMIANWCEENNVKLPSNSKQSNSSHISSPSDHLLHQDLDRLCSFESSASSDSNSNQIANAFEKPKDDNSFRSSRESDRSWNGETEKFEQQSPAPSCSNSRSESFSSSISSTDYVLPVLKEVSGISNKHQNVELSREITDGCPASPAYKESVIYPWLSGKQFHSPGSKIGRMEDENKYNESNNISITSHSKVASHPVGSNELITTSHVNELIEDLQSQSNETQTAAAEQLRLCTKHNMENRISVGRCGAIMPLLSLLYSERKITQEHAVTALLNLSINEGNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIDNNKAKIGRSGAVKALVGLLASGTLRGKKDSATALFNLSIFHENKARIVQAGAVKFLVLLLDPTDKMVDKAVALLANLSTIAEGRIEIAREGGIPSLVEIVESGSLRGKENAASILLQLCLHNQKFCTLVLQEGAVPPLVALSQSGTPRAKEKENSVQILVFNHGYRINLLKQCAKKSGILIYVLQCILPPALPPKTVKKHNSFSVIFVISVKESRGRGNHEDKAILIISLPFSLLPQ* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1377 857 SUPERFAMILY RING/U-box 239 315 - -
Gso3g1377 857 MobiDBLite consensus disorder prediction 386 407 - -
Gso3g1377 857 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Gso3g1377 857 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Gso3g1377 857 PANTHER U BOX DOMAIN-CONTAINING 12 790 - -
Gso3g1377 857 MobiDBLite consensus disorder prediction 365 385 - -
Gso3g1377 857 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Gso3g1377 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 630 672 IPR000225 GO:0005515
Gso3g1377 857 Pfam Armadillo/beta-catenin-like repeat 621 658 IPR000225 GO:0005515
Gso3g1377 857 Pfam Armadillo/beta-catenin-like repeat 539 576 IPR000225 GO:0005515
Gso3g1377 857 Pfam Armadillo/beta-catenin-like repeat 578 617 IPR000225 GO:0005515
Gso3g1377 857 Gene3D - 485 809 IPR011989 -
Gso3g1377 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 590 IPR000225 GO:0005515
Gso3g1377 857 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 12 790 - -
Gso3g1377 857 SMART arm_5 537 577 IPR000225 GO:0005515
Gso3g1377 857 SMART arm_5 619 659 IPR000225 GO:0005515
Gso3g1377 857 SMART arm_5 578 618 IPR000225 GO:0005515
Gso3g1377 857 SMART arm_5 660 699 IPR000225 GO:0005515
Gso3g1377 857 SMART arm_5 700 740 IPR000225 GO:0005515
Gso3g1377 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 671 712 IPR000225 GO:0005515
Gso3g1377 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Gso3g1377 857 MobiDBLite consensus disorder prediction 361 407 - -
Gso3g1377 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 589 631 IPR000225 GO:0005515
Gso3g1377 857 SUPERFAMILY ARM repeat 500 771 IPR016024 -
Gso3g1377 857 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1377 Gso-Chr3 39700112 39705259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1377 7 772 U-box Gene Family AT3G54790 51.933 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1377 - - gmx:100782215 1604.73