Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1367 ATGGATTTAGATTTTGATTCCACTTTTTTCCTAAACCAAAACCTTAGTTTCTTCCCAGAAAACTCCTCTATTTTTGGAGACACTTTTTCTTGGGACTACAACTTTGTTTTGGATGATATCTTCAACAACTTGAGCGACAATTCGTCACAATCACAAACCAAGGAAACATCCTCAGCGTCCAATGTTTCCAGTTGTATTGGTAGCGTTGAGTTACAAGAAGTCTCATCTAACACCACTTACAAGGAAGTGAAAAAAGTACGACCACCACCACCATCACCACCACTACCTTCACAACAAGTTGCCAAGGAGCCCAGGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAATTCGCGGCCGAGATAAGAGATTCCACTCGAAACGGCGTTCGAGTGTGGATCGGAACCTTTGACACGGCCGAAGCCGCGGCTTTGGCTTATGATCAAGCCGCGTTTTCTACAAGAGGGTCTCTTGCGGTGCTGAATTTCCCAGAGGAAGTGGTGAGGGAGTCCCTTAAAGACATGCCAAGTAAGCCATGGGAAGAAGGTTCCTCCCCTGTTTTGGCTCTTAAGAGAAAACACACTATGAGAACAAAGTCCAATTCTAAGAAGAAGACCAAGGTTGATCAGAGGGAACAATTAGACTTCAGCAGAACTTCGCAAAATGTGCTCGTGTTCGAGGATTTGGGTGCTGAGTACCTAGAACAGCTTTTGACTTTGACTTCTTAA 729 0.4513 MDLDFDSTFFLNQNLSFFPENSSIFGDTFSWDYNFVLDDIFNNLSDNSSQSQTKETSSASNVSSCIGSVELQEVSSNTTYKEVKKVRPPPPSPPLPSQQVAKEPRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRTKSNSKKKTKVDQREQLDFSRTSQNVLVFEDLGAEYLEQLLTLTS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1367 242 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
Gso3g1367 242 MobiDBLite consensus disorder prediction 194 213 - -
Gso3g1367 242 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Gso3g1367 242 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Gso3g1367 242 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Gso3g1367 242 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Gso3g1367 242 PANTHER DNA-BINDING DOMAIN 12 239 IPR044808 GO:0003700|GO:0009873
Gso3g1367 242 SUPERFAMILY DNA-binding domain 106 165 IPR016177 GO:0003677
Gso3g1367 242 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Gso3g1367 242 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 239 - -
Gso3g1367 242 MobiDBLite consensus disorder prediction 79 106 - -
Gso3g1367 242 CDD AP2 107 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1367 Gso-Chr3 39604848 39605810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1367 103 238 AP2-EREBP Transcription Factor Family AT2G31230 58.228 1.07e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g1367 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1367 K14516 - gmx:100779524 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1362 19 42414451 42415510 Gso3g1367 3 39604848 39605810 GST
Gso3g1367 3 39604848 39605810 Gso10g0309 10 3304216 3305418 PCT
Gso10g0309 10 3304216 3305418 Gso3g1367 3 39604848 39605810 PCT