Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1366 ATGGAGGGAGGGAGAGGAGTTGTGAATGGAAACCCTTCAAACGCAGATGTTCGGTACAGAGGAATTCGTAGGAGGCCATGGGGCAAGTTTGCAGCAGAGATTCGTGACCCCACGAGAAAAGGGGCTCGCATATGGCTTGGAACCTTTGACACTGCTGAACAAGCTGCACGTGCTTATGATGCTGCTGCTTTTCATTTTAGGGGTCACAAGGCCATACTCAACTTCCCAAATGAGTATGGTAATGTCACTCCTAATCCAAATAACAATTATTCTTCAACTTCTTTGCCTCTTCCTTTGTTGTCGTCTTCCTCTTCTTCTTCTTCTTCTTTCCCTTCCTACTATGGCGAGGGTTCGTCGCAACAACAACAAGGAAATGATGATGACACTTTTGAATTGGAATGCTTGGACAATAAGTTGTTGGAAGAACTCCTTCAGCAGGCGCCTGATCGTTCAGGCAACTGA 462 0.461 MEGGRGVVNGNPSNADVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDAAAFHFRGHKAILNFPNEYGNVTPNPNNNYSSTSLPLPLLSSSSSSSSSFPSYYGEGSSQQQQGNDDDTFELECLDNKLLEELLQQAPDRSGN* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1366 153 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Gso3g1366 153 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Gso3g1366 153 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gso3g1366 153 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Gso3g1366 153 MobiDBLite consensus disorder prediction 78 132 - -
Gso3g1366 153 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Gso3g1366 153 PANTHER DNA-BINDING DOMAIN 15 145 IPR044808 GO:0003700|GO:0009873
Gso3g1366 153 MobiDBLite consensus disorder prediction 78 128 - -
Gso3g1366 153 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Gso3g1366 153 PANTHER - 15 145 - -
Gso3g1366 153 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Gso3g1366 153 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1366 Gso-Chr3 39592683 39593685 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1366 17 144 AP2-EREBP Transcription Factor Family AT3G23230 58.594 9.81e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g1366 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1366 - - gmx:100778998 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1361 19 42403384 42404140 Gso3g1366 3 39592683 39593685 GST
Gso3g1366 3 39592683 39593685 Gso10g0308 10 3294203 3295026 PCT
Gso10g0308 10 3294203 3295026 Gso3g1366 3 39592683 39593685 PCT