Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1365 ATGGATTTTAATTCTTCTCTATTTTCATGCCAAAGTCTAGAATCCCATCTCAATTCATGGGAAGAGCTGTTTTCGTTCAACAACCTTCCCTTGAATGCAACAAATGAATCGTCCTTGGACTCCAAATCTTCATCCTCCAATGAAGGAATAATGGAGTCACAAGAAATCACCTCCAATATTACATGTGACGGCCACGTTGAAGAAAAATATTCACCACCACCATCACTACTAGATGGTTCTAAGCGAGAGAAGAGGACCTATAGAGGAGTAAGAAGCAGGCCATGGGGAAAATTCGCAGCAGAAATAAGAGACCCCACAAGAAATGGGGTTCGAGTATGGATTGGAACATTTGTCTCTGCTGAAGAAGCTGCTTTGGCTTATGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTGGCTACCCTTAACTTTTCAGTGCAAGTGGTGATGGAGTCCCTTCAAGACATGGGTTTCAAGGCATTGAAAAATGATCTCTCACCCGTGTTGGCACTCAAGAGGATGCACGTGACGAGAACAAAATCTAGGGCTAGTAGGAGTGGAAACAAAAAGGTTAAAAGGGCTTGCGGCAGCAACGGGAAATGGGACACTAGTACTCAAAATTTGTTGGTGTTGGAGGATTTGGGTCCTGAATACCTAGACCAACTTTTGAGCTTCACTTGCCCTGGTTCTTGGTGCTGA 696 0.4411 MDFNSSLFSCQSLESHLNSWEELFSFNNLPLNATNESSLDSKSSSSNEGIMESQEITSNITCDGHVEEKYSPPPSLLDGSKREKRTYRGVRSRPWGKFAAEIRDPTRNGVRVWIGTFVSAEEAALAYDQAAFLTRGVLATLNFSVQVVMESLQDMGFKALKNDLSPVLALKRMHVTRTKSRASRSGNKKVKRACGSNGKWDTSTQNLLVLEDLGPEYLDQLLSFTCPGSWC* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1365 231 Gene3D AP2/ERF domain 85 147 IPR036955 GO:0003700|GO:0006355
Gso3g1365 231 CDD AP2 87 143 IPR001471 GO:0003700|GO:0006355
Gso3g1365 231 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Gso3g1365 231 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Gso3g1365 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 225 - -
Gso3g1365 231 PANTHER DNA-BINDING DOMAIN 26 225 IPR044808 GO:0003700|GO:0009873
Gso3g1365 231 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Gso3g1365 231 SUPERFAMILY DNA-binding domain 86 145 IPR016177 GO:0003677
Gso3g1365 231 Pfam AP2 domain 87 132 IPR001471 GO:0003700|GO:0006355
Gso3g1365 231 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1365 Gso-Chr3 39576659 39577707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1365 83 226 AP2-EREBP Transcription Factor Family AT2G31230 51.220 1.69e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g1365 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1365 K14516 - gmx:100818907 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1365 3 39576659 39577707 Gso2g0054 2 663834 664914 PCT
Gso3g1365 3 39576659 39577707 Gso10g0062 10 703145 704088 PCT
Gso13g0916 13 23498312 23498982 Gso3g1365 3 39576659 39577707 PCT