LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1364	ATGAAGGGGAACCAAAGCAAATTAAGTATAGAGGAGTACGTAGGAGGCCATGGTGCTCGTGTGTGGCTTGGAACCTTTAACACAGCTGAGGAGGCTGCAAGAGCTTATGATCGTGCTGCCTTTGAGATGAGAGGTACTATGGCCATTCTCAATTTCCCAAATGAACACCAACCTTGCAATGTGGCTTCTCTTAGCAAGAAGTCCTCATCATCTAACACTGAGCTTGGTAAACAAGTTGTGGTATTTCAGTGTTTGGATGACAAATTGTTAGAGGAAATCCTTGACTGTGATGGGGAAAACCATCAATGA	309	0.4401	MKGNQSKLSIEEYVGGHGARVWLGTFNTAEEAARAYDRAAFEMRGTMAILNFPNEHQPCNVASLSKKSSSSNTELGKQVVVFQCLDDKLLEEILDCDGENHQ*	103

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1364	102	CDD	AP2	11	54	IPR001471	GO:0003700\|GO:0006355
	Gso3g1364	102	Gene3D	AP2/ERF domain	4	54	IPR036955	GO:0003700\|GO:0006355
	Gso3g1364	102	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF098	16	93	-	-
	Gso3g1364	102	SMART	rav1_2	12	59	IPR001471	GO:0003700\|GO:0006355
	Gso3g1364	102	ProSiteProfiles	AP2/ERF domain profile.	1	53	IPR001471	GO:0003700\|GO:0006355
	Gso3g1364	102	PANTHER	DNA-BINDING DOMAIN	16	93	IPR044808	GO:0003700\|GO:0009873
	Gso3g1364	102	Pfam	AP2 domain	16	45	IPR001471	GO:0003700\|GO:0006355
	Gso3g1364	102	SUPERFAMILY	DNA-binding domain	17	54	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1364	Gso-Chr3	39572961	39573269	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g1364	17	97	AP2-EREBP Transcription Factor Family	AT3G23230	50.526	4.62e-24	87.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Gso3g1364		AP2	1.3e-08	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1364	-		-	gsj:114405264	197.593

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1359	19	42368383	42369097	Gso3g1364	3	39572961	39573269	GST
	Gso10g0304	10	3252973	3253624	Gso3g1364	3	39572961	39573269	PCT