Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1363 ATGGCACTGAACTACAACCCCTCTTACAATCTTGTGCATCAAGCTCCACATGCTAACACAATAATCTATCACACAACACAACCTGCTTCAGATTTGCCGATACTTGCCATCATTGTGCCCAGCATCTTTGTCACTGCTTTCATACTCATCACCTACTTAACCCTTGTGACAAAATGCTGCTCAAACTGGCACCAACTTAACCCTTTGAGATGGATTTCAACACTACAAGCCTCACAGCATGAACATCAAGACCATCAAGACCCCTTCATAGCACTCTCTCTTTCTCCCATGATGTGGAACCATGGACTTGATGAATCTGCCATCAAAGAAATCCCAACACTTGAATGCACAAAAGCAGAAGCTGAGAAGAATATTCAAAGTGTATGTGGCTGTGTGGTATGTTTGACTGAGTTTCAAGAACATGATATGCTAAAAGTTTTGCCAAACTGTAGCCATGCCTTTCACTTGCATTGCATTGATATTTGGCTTCAAACCAATGCTAATTGCCCTCTTTGCAGATCAAGCATTACTTCAGGCAAAAAACACTGTTCATTGGATGATGTCATAGCTCCAAGTTCTTCCCCTCAGGATTCTCAATTGCTATCTTACATGGGAAGTGACGAAGATTTTGTGGTCATTGAACTTGGGGGACAACATGTGGCAACACTGCCTCAGATGATGCAACGAGAAAGAAGTGACACAAGGGAAAGAAATCAAAGAATAGTAGGGTATAGTAGAAGTCACTCTACAAGGAAGTGTCACCATGTTTCTATCATGGGAGATGAGTGCATTGATGTTAGGAAGAAAGATGAGCAGTTTTCTATTCAGCCGATTCGAAGATCTTTCTCGATGGATTCAGCTAATGATAAGCAACTTTACTTGGATTTTCAAACCATGATACAACAGAATAATAGGCATCAAAATCTGGCTAGTGCCAGTGAAGATTGTAATAGCAGAAGTCGAAGATCATTCTTTCCATTTCGATATGCTCGGGGATCGAAAACTCTGGTCGTTCCTCTAGAGAACAAAGTTTAA 1035 0.4106 MALNYNPSYNLVHQAPHANTIIYHTTQPASDLPILAIIVPSIFVTAFILITYLTLVTKCCSNWHQLNPLRWISTLQASQHEHQDHQDPFIALSLSPMMWNHGLDESAIKEIPTLECTKAEAEKNIQSVCGCVVCLTEFQEHDMLKVLPNCSHAFHLHCIDIWLQTNANCPLCRSSITSGKKHCSLDDVIAPSSSPQDSQLLSYMGSDEDFVVIELGGQHVATLPQMMQRERSDTRERNQRIVGYSRSHSTRKCHHVSIMGDECIDVRKKDEQFSIQPIRRSFSMDSANDKQLYLDFQTMIQQNNRHQNLASASEDCNSRSRRSFFPFRYARGSKTLVVPLENKV* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1363 344 SUPERFAMILY RING/U-box 108 179 - -
Gso3g1363 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 179 IPR013083 -
Gso3g1363 344 SMART ring_2 131 172 IPR001841 -
Gso3g1363 344 Pfam Ring finger domain 131 173 IPR001841 -
Gso3g1363 344 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 341 - -
Gso3g1363 344 PANTHER RING-H2 FINGER PROTEIN ATL16 13 341 IPR044600 GO:0016567|GO:0016740
Gso3g1363 344 CDD RING-H2_PA-TM-RING 131 173 - -
Gso3g1363 344 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1363 Gso-Chr3 39567974 39569638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1363 21 310 C3H Transcription Factor Family AT1G04360 40.187 4.66e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1363 K19041 - gmx:100802567 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1363 3 39567974 39569638 Gso10g0064 10 729335 731047 PCT
Gso13g0913 13 23464352 23466025 Gso3g1363 3 39567974 39569638 PCT