Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1358 ATGGCTTCTGCTAGTGGAAATGGTGTCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGAAGAAGGTGTGCTTCTGATTGTATCTTTGCACCTTACTTTTGTTCAGAACAGGGCCCTGCTAGATTTGCAGCCATACACAAGGTATTTGGTGCCAGCAACGTTTCAAAGTTGCTTTTGCACATACCAGCTCATGATCGTTGTGAAGCGGTTGTCACAATCACTTATGAGGCTCAGGCTCGTATTAGAGACCCTGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCACGCTTGCAGGCACAGCTGATGCAGGTAAAAGCTCAGCTGACTCAGAACCTAGTGGAGTCCAGGAACATAGAGAATAATCATCATTTGCAAGGGAATAATAACAATGTTACAGGACAACTAATGAATCATCCATTTTGTCCCACTTACATGAATCCTATATCTCCTCAAAGCTCACTTGAATCAATTGATCACAGCAGCATCAATGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGATTTCCAAATCCAAGCTAAAGAAAGACCATACAACAACAATGACTTGGGGGAGCTGCAAGAACTGGCACTAAGGATGATGAGGAACTGA 642 0.4424 MASASGNGVSNGSGSPCGACKFLRRRCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTITYEAQARIRDPVYGCVSHIFALQQQVARLQAQLMQVKAQLTQNLVESRNIENNHHLQGNNNNVTGQLMNHPFCPTYMNPISPQSSLESIDHSSINDGMSMQDIQSREDFQIQAKERPYNNNDLGELQELALRMMRN* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1358 213 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 212 - -
Gso3g1358 213 Coils Coil 96 116 - -
Gso3g1358 213 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
Gso3g1358 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 212 - -
Gso3g1358 213 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1358 Gso-Chr3 39491504 39493971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1358 3 213 AS2 family AT2G42430 53.878 1.55e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso3g1358 LOB 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1358 K13944 - gmx:100816433 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1354 19 42281238 42282982 Gso3g1358 3 39491504 39493971 GST
Gso3g1358 3 39491504 39493971 Gso10g0294 10 3147080 3148742 PCT
Gso10g0294 10 3147080 3148742 Gso3g1358 3 39491504 39493971 PCT